BAC Information

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BAC

Clone NameMSMg01-128N02
Chromosome5 (Build37)
Map Location 111,736,832 - 111,886,455
singlet/doubletdoublet
Overlap genePitpnb, Mn1
Upstream genePole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128N02.T7 (MSMg01no128_n02.b1)MSMg01-128N02.TJ (MSMg01no128_n02.g1)
ACCAG336990AG336991
length708694
length of high quality
(start - end)		406 (36 - 441)381 (58 - 438)
definitionCHROMAT_FILE: MSMg01no128_n02.b1 PHD_FILE: MSMg01no128_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:02 2005CHROMAT_FILE: MSMg01no128_n02.g1 PHD_FILE: MSMg01no128_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,886,102 - 111,886,455)(111,736,832 - 111,737,211)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGT
ATCCCGCACAAGGGTGAGGATTAGAGTCAGGTGTGATGACCATCTGTAAG
TCCTGTGCTCAGAAGATGAGGCAGCATCCTCAGAGCAACCTGGCTAGCCA
GACTAGCTAAACTGGTGAGAGCAGGTGTGAACACGCATGTGCACACACAT
ATGAACATGCATGTATACACACATGTGTACATGCATGTGAACACACAGGC
ACATGTGAACACATATGCACACATGTGAACACACATGTGCACAGGTGTGT
GAACACACAAAACATATAGGCCCATTTACACACATGTGAACACATACATA
AACACGCATGTGCACACGCAGGCACACCACACATAACACATATACACAAA
TGAAGAATCCTATGGAAAGAAACAAGCCCCACCCACAAACATGTTTCAGA
CATCGTTAACGCTGTATTTATTGTTATTTAAGCTGCTCAGCAAAACATAT
ACACGTATATACCGTATGCGTGAATACGGCAGACTCAATTTTACCTATTT
AAAACCAAAGACAGAAAGAAAAATACCACTCAGTCTCATGAGCTATCGTC
CGTCACTGCCTTCCCACCAAGCATTCAGAAATGGTTCTAAGAGTCACATA
AAGCTTACAGGTCTCTTGCACCGCACCGCAGGGTTTAAGGGTTCACACTT
ATACACGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGACAGCCAGGGCTTCACAGAGTCTTGGGGAAAAAGAAAAA
GAACCGCAAAGTGAAGTGACCAGTTGATGGATAATCAGGATGGCACATGG
AGAACTGCTGCCCTTCCAGACTCAAGTATGGCTCTGTAACTGTTAATGTT
TCTCTCTGTGTGTCTCTTTTTCTGTCTCTCTGCTTCTGCGTCTGCCTCTG
CCCCCCCTCTACCCTGACCCCTCTGTCTCTCTGGGTTTTTTGAGACAAGA
TATTTCTCTGTATCCCAGATCTTTCTCTGTATCCCAGATCTTTTTCTGTA
TCCCAGACTAGGGTGTAGAAAGAATCAATACAGATATACATAAAGAAAAA
AAAATATTCCTGGAGAATTCTGACTCAAAGTGATTTGTTGCACTTGACAA
TATACAAACACATCACATCATATATGGCATGACGACCAACAGACCCAATA
TATGCCCCACACCATAAGGGAACCAATGAGCCTGTAAGATTAAACATTCC
TTTTGTGTGCGTGTGTCTTTTCTGTACCTAAAACCACAGCCTCAAACGTA
TATGACTAATACCCCCTCCCTTACATACTCCCTCAGACCGATAGTCTGTT
GCCATGCTTCCTCCTGGCCTTATGCGTCAAACACCCAATCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_n02.b1 MSMg01no128_n02.b1 CHROMAT_FILE:
MSMg01no128_n02.b1 PHD_FILE: MSMg01no128_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:02 2005
         (406 letters)



>mm_chr5_111886102_111886907
          Length = 806

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtatcccgcacaagggtgaggattagagtcaggtgtgatgaccatctgtaa 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattcagtgtatcttgcacaagggtgaggattagagtcaggtgtgatgaccatctgtaa 295

                                                                       
Query: 65  gtcctgtgctcagaagatgaggcagcatcctcagagcaacctggctagccagactagcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtcctgtgctcagaagatgaggcagcatcctcagagcaacctggctagccagactagcta 235

                                                                       
Query: 125 aactggtgagagcaggtgtgaacacgcatgtgcacacacatatgaacatgcatgtataca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aactggtgagagcaggtgtgaacacgcatgtgcacacacatatgaacatgcatgtataca 175

                                                                       
Query: 185 cacatgtgtacatgcatgtgaacacacaggcacatgtgaacacatatgcacacatgtgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cacatgtgtacatgcatgtgaacacacaggcacatgtgaacacatatgcacacatgtgaa 115

                                                                       
Query: 245 cacacatgtgcacaggtgtgtgaacacacaaaacatataggcccatttacacacatgtga 304
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 114 cacacatgtgcacaggtgtgtgaacacacaaaacacacaggcccatttacacacatgtga 55

                                                                 
Query: 305 acacatacataaacacgcatgtgcacacgcaggcacaccacacataacacatat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  acacatacataaacacgcatgtgcacacgcaggcacaccacacataacacatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no128_n02.g1 MSMg01no128_n02.g1 CHROMAT_FILE:
MSMg01no128_n02.g1 PHD_FILE: MSMg01no128_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:02 2005
         (381 letters)



>mm_chr5_111736632_111737412
          Length = 781

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggcttcacagagtcttggggaaaaagaaaaagaaccgcaaagtgaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caggacagccagggcttcacagagtcttggggaaaaagaaaaagaaccgcaatgtgaagt 260

                                                                       
Query: 61  gaccagttgatggataatcaggatggcacatggagaactgctgcccttccagactcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccagttgatggataatcaggatggcacatggagaactgctgcccttccagactcaagt 320

                                                                       
Query: 121 atggctctgtaactgttaatgtttctctctgtgtgtctctttttctgtctctctgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctctgtaactgttaatgtttctctctgtgtgtctctttttctgtctctctgcttct 380

                                                                       
Query: 181 gcgtctgcctctgccccccctctaccctgacccctctgtctctctgggttttttgagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtctgcctctgccccccctctaccctgacccctctgtctctctgggttttttgagaca 440

                                                                       
Query: 241 agatatttctctgtatcccagatctttctctgtatcccagatctttttctgtatcccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatatttctctgtatcccagatctttctctgtatcccagatctttttctgtatcccaga 500

                                                                       
Query: 301 ctagggtgtagaaagaatcaatacagatatacataaagaaaaaaaaatattcctggagaa 360
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ctagggtgcagaaagaatcaatacagatatacagaaagaaaaaaaaatattcctggagaa 560

                               
Query: 361 ttctgactcaaagtgatttg 380
           ||||||||||||||||||||
Sbjct: 561 ttctgactcaaagtgatttg 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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