BAC Information

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BAC

Clone NameMSMg01-128O05
Chromosome5 (Build37)
Map Location 110,816,869 - 110,981,334
singlet/doubletdoublet
Overlap genenone
Upstream geneEG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128O05.T7 (MSMg01no128_o05.b1)MSMg01-128O05.TJ (MSMg01no128_o05.g1)
ACCAG337043AG337044
length689696
length of high quality
(start - end)		432 (51 - 482)348 (78 - 425)
definitionCHROMAT_FILE: MSMg01no128_o05.b1 PHD_FILE: MSMg01no128_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:07 2005CHROMAT_FILE: MSMg01no128_o05.g1 PHD_FILE: MSMg01no128_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,980,901 - 110,981,334)(110,816,869 - 110,817,214)
sequence
AATCTAAATTTGCGGCGCTATACGACTCCTATTTCGAGAGAAGCGCGGAA
TCTCCTAAGTCCACTTGCCCTTCATTTACATCTCAGTTCACACATTTACT
GGATAGAGTCCCTGGCTGTACCTTTGTGAGAGTCCTCAGCTGTGCAGCAC
GGCACCTGGGGGCCTGACATATGGTTTTCTTGGTTTCTCTCCAGTTGGAA
GTACAGAAGTCTAAGATTCGGGCATAGTGAATAGAGTTCTGTCCCTGTGG
AAGTTCTAAGGAAGGCATCCCCCGCCTTTCTTTCTCTGCTTCTGGAAGAT
CCCAGAATCCCTTGGATTGTGGCTACACTGCTTTGTCCCTGCCTCTGACC
TTATAAGCCACTTCCTGTATCTTCTCTCCATTTTTAAAAAGACCTATTTT
TATTACTGCGTGCGCACATGTGCAGGCAGGTGCCCACCGAGGCCTGATGC
AGAAATCTGATCCCTTGGGCTGGAATTACAGACAGCTGTGAGACACCTGA
TGTAGGCTTAGGAGTCTAACGCCAGTCTCCTGAAAGAGCAGCAAGTGCTC
TTAACTGCTGAGCCATCTCTCCAGCCCCTTTCTCCTCTTCTCATGGAGAC
AGATGTCATTAGATTTAAGCTCACCTCTGACAATATAATTTCATCTTCAA
TACCTGCAAAGACCTTTTCTCCATATAAGATCACTTTCA

TTTCGATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCATTCCTAGGCCTGTGGGAG
CCAGCTCCATGGGGTGCGTTAGAGCCAGAATGCCAGGGTGGGCCACCATT
CATCTTTACAAATGAATCTTTACAAATTTATCCTTACAACTGCAGCCCTT
GGATAATCCAGTGATAACCTGTCAGAAGTACCAGCCTCAACAGTATCTTC
AGCTCTTTCCTTATGTTTGGCTTATTTACCAAATAAAGGTCCTCTCCTTA
CAAAGGAAAAAAAAAAATAACAAAAACAAAGTCACCACCAAATCCCGTTA
TTTCCTCCCACAAAACAAAACAAAACAAAACCCACTGTGTTGGATGCCTA
ACAGCCAGTCTCACAAGCACCACCTGCCAATAAGGAAACTGAGGTAGGGA
TGAGACAGACATGTTCAAGGGTCTGGCTCCTGGCTCCTAGGATTGGAGTG
GACCTGTCTGCTGGTAGTCAGATTTTAGGATCATTGACAGAACATGGTCA
ACTGGAGTGGCCCCTGCTCACACCATGGTGAGGCCTATAGAAAGGCCAGC
ATGCCCGTGTGATACAGGGGTATATGTGACTCAAGCTAGCTTTTGCCCGC
TTCTGGATGCCTGTCCCAGGACAGGACCCTTCATTTATTTTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_o05.b1 MSMg01no128_o05.b1 CHROMAT_FILE:
MSMg01no128_o05.b1 PHD_FILE: MSMg01no128_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:07 2005
         (432 letters)



>mm_chr5_110980701_110981534
          Length = 834

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%), Gaps = 2/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctaagtc-cacttgcccttcatttacatctcagttcacacatttactggatagagt 59
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 634 tctcctaagtcacacttgcccttcatttacatctcagttcacacatttactggacagagt 575

                                                                       
Query: 60  ccctggctgtacctttgtgagagtcctcagctgtgcagcacggcacctgggggcctgaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccctggctgtacctttgtgagagtcctcagctgtgcagcacggcacctgggggcctgaca 515

                                                                       
Query: 120 tatggttttcttggtttctctccagttggaagtacagaagtctaagattcgggcatagtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatggttttcttggtttctctccagttggaagtacagaagtctaagattcgggcatagtg 455

                                                                       
Query: 180 aatagagttctgtccctgtggaagttctaaggaaggcat-cccccgcctttctttctctg 238
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 454 aatagagttctgtccctgtggaagttctaaggaaggcatccccccgcctttctttctctg 395

                                                                       
Query: 239 cttctggaagatcccagaatcccttggattgtggctacactgctttgtccctgcctctga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cttctggaagatcccagaatcccttggattgtggctacactgctttgtccctgcctctga 335

                                                                       
Query: 299 ccttataagccacttcctgtatcttctctccatttttaaaaagacctatttttattactg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccttataagccacttcctgtatcttctctccatttttaaaaagacctatttttattactg 275

                                                                       
Query: 359 cgtgcgcacatgtgcaggcaggtgcccaccgaggcctgatgcagaaatctgatcccttgg 418
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cgtgtgcacatgtgcaggcaggtgcccaccgaggcctgatgcagaaatctgatcccttgg 215

                         
Query: 419 gctggaattacaga 432
           ||||||||||||||
Sbjct: 214 gctggaattacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 834
Length adjustment: 9
Effective length of query: 423
Effective length of database: 825
Effective search space:   348975
Effective search space used:   348975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no128_o05.g1 MSMg01no128_o05.g1 CHROMAT_FILE:
MSMg01no128_o05.g1 PHD_FILE: MSMg01no128_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:08 2005
         (348 letters)



>mm_chr5_110816669_110817417
          Length = 749

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccattcctaggcctgtgggagccagctccatggggtgcgttagagccagaatgccagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 agccattcctaggcctgtgggagccagctccatggggtgcgttagaggtagaatgccagg 260

                                                                       
Query: 61  gtgggccaccattcatctttacaaatgaatctttacaaatttatccttacaactgcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggccaccattcatctttacaaatgaatctttacaaatttatccttacaactgcagcc 320

                                                                       
Query: 121 cttggataatccagtgataacctgtcagaagtaccagcctcaacagtatcttcagctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggataatccagtgataacctgtcagaagtaccagcctcaacagtatcttcagctctt 380

                                                                       
Query: 181 tccttatgtttggcttatttaccaaataaaggtcctctccttacaaaggaaaaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttatgtttggcttatttaccaaataaaggtcctctccttacaaaggaaaaaaaaaaa 440

                                                                       
Query: 241 -taacaaaaacaaagtcaccaccaaatcccgttatttcctcccacaaaacaaaacaaaac 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacaaaaacaaagtcaccaccaaatcccgttatttcctcccacaaaacaaaacaaaac 500

                                                         
Query: 300 aaaacccactgtgttggatgcctaacagccagtctcacaagcacca 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacccactgtgttggatgcctaacagccagtctcacaagcacca 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 749
Length adjustment: 9
Effective length of query: 339
Effective length of database: 740
Effective search space:   250860
Effective search space used:   250860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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