Query= MSMg01no128_o18.b1 MSMg01no128_o18.b1 CHROMAT_FILE:
MSMg01no128_o18.b1 PHD_FILE: MSMg01no128_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:10 2005
(244 letters)
>mm_chr5_113181662_113182305
Length = 644
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%)
Strand = Plus / Minus
Query: 1 aggcattggtggcccagggcagtagcatctgggatgccagagctgggcctgatgaccttg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 aggcattggtggcccagggcagtagcatctgggatgccagagctgggactgatgaccttg 385
Query: 61 tgtgtctagtgctgaagctttccctatgatattcctgcccttggcatctagcctgctgaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtctagcgctgaagctttccctatgatattcctgcccttggcatctagcctgctgaa 325
Query: 121 aaatgactttactgttggagactgagaaggattctaggcccctgagacccttgagccgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatgactttactgttggagactgagaaggattctaggcccctgagacccttgagccgcc 265
Query: 181 acaaggatgctgatggatcttccttcagtatccctccctccccgtcccagccagctccat 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 acaaggatgctgatggatcttccttcagtatcccttcctccccgtcccagccagctccat 205
Query: 241 ttgt 244
||||
Sbjct: 204 ttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no128_o18.g1 MSMg01no128_o18.g1 CHROMAT_FILE:
MSMg01no128_o18.g1 PHD_FILE: MSMg01no128_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:10 2005
(235 letters)
>mm_chr5_113001485_113002119
Length = 635
Score = 389 bits (201), Expect = e-113
Identities = 227/237 (95%), Gaps = 4/237 (1%)
Strand = Plus / Plus
Query: 1 tcttcctagcacctactgcattcctcctgggccagccctgctcagccca--acttcactc 58
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct: 201 tcttcctggcacctactgcattcctcctgggccagccctgctcag--caagacttcaccc 258
Query: 59 atcaggtctggtaaaagtcatgcacagccacctgtcagattccatcatggtccatccctc 118
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 atcaggcctggtaaaagtcatgcacagccacctgtcatattccatcatggtccatccctc 318
Query: 119 tattaaagcacacagatgacggccgagaccctgtggatctcttgctggggtgccagaagt 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cattaaagcacacagatgacggccgagaccctgtggatctcttgctggggtgccagaagt 378
Query: 179 ggtgcctagcagaggaacattgggtccccagcattgctcatatccctcatgagccgt 235
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 379 ggtgcctagcagaggaacattgggtccccagcattgctcatatccctcacgagccgt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
