BAC Information

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BAC

Clone NameMSMg01-129J20
Chromosome5 (Build37)
Map Location 12,130,759 - 12,131,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J20.T7 (MSMg01no129_j20.b1)MSMg01-129J20.TJ (MSMg01no129_j20.g1)
ACCAG337580AG337581
length716736
length of high quality
(start - end)
441 (48 - 488)239 (123 - 361)
definitionCHROMAT_FILE: MSMg01no129_j20.b1 PHD_FILE: MSMg01no129_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:05 2005CHROMAT_FILE: MSMg01no129_j20.g1 PHD_FILE: MSMg01no129_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATATTGCAGAGATCCGCGGAATTCCTAAAGATGTCCCATGTTG
ATCTTCAGAGCACAAAAGCTAGACTCCCCCATAATGCTTTAATATCCATT
CCCTGACAATTATCATAGGCACAGTTTCATTAATGTTACATTCTGTTCTA
TTACCCTAATGCATTCAAAGATGTATTATTTCCCATGGTAATAAAATTGA
TACCTCCTCGGCAATATTATGAGAAAATGGAATACATGATAGATAGTAGA
TTTTTTTTTAAAAATCATGTCAAACCACAGTTCTGCCATTTACTAACTTT
TGTTATAAATGAGCACTCTAACCATAGACTTCTTTACTCTTAAATGAATG
TAATTTCCATGTAACATAAGTTTCAGAATTAAATAAATAAAGGCTCCCGA
TAAATCAACTGTATGAAAATCAGGTACATGAAGACATTTTATATGTCTTT
CTGAAATTAAAATTCATAACATTTATATAATAAACCTTTACGAAAATGGC
ATTTACATTCCATGTACAAGTGTTCCTCATATTGACTATATAGAGTCAAG
AACACTTGGGTTCTCAGAATGAAGTAGTTGCAAGTGACATTTCATAATAC
CTCCCAATTATGGCATTTACCACATTTTTTTTACTATACGGTTCATTTGT
CACAGATGGTACATGCTACACAATTTCAATAATAACCACCTTTTTAAAAG
GGTAACACCATACTAA
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGAGACTCACCTGCCTCATGCCTTCCA
AGTGTTGGGAATATGGGTGTGCCCCCCCAGCATTGAGATGAGATATTGAA
ATCTTTTGATAATATGGCCAAAAGTAGTATGTTTGGAACATTTAAGGAAT
ATATTTGTAGCCTTTTACAAAACTGCTATGCTGACTTCCATAGTGTCTGC
ATTGGCTTGCACCCCCACAAGCAGTAAATACACTTTGCTATGTTCCCAGA
ATCTTACCAGTGTTTGCTATAATTTGCCTTTATTCTATTTCAGTCATTGT
AATTTGAGTATTTTTTTTTTTCCCCCCCCCCCCTAATTTGAATTTCCACA
GAGGCATGCCTAGAATGATATCCAACCAATGAACATGGCATTATGACCTT
ATGAGGGAGGGAGAAGACCCTCATAAAGGCAGGGTGAGGGAGGATGGGAT
AGGGAGTTTCCAGAGGGGAAATCAGGAAAAGGAATAACATTTGAAATGTA
AATAAATATAATATCCCATAAAATTTTAAGAAAGAATCTTTATGATTGTA
TGAAATACTCCAATTGCAATTTGGTGCTTGCAACCTGCATGTGCAGGTAA
CTCATATCCAATGATAATTTAAATTCATCCCCTACACATATGCCTACTAA
TAATACCAATCAATCTTTGGAATAATGATTTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j20.b1 MSMg01no129_j20.b1 CHROMAT_FILE:
MSMg01no129_j20.b1 PHD_FILE: MSMg01no129_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:05 2005
         (441 letters)



>mm_chr5_12130559_12131399
          Length = 841

 Score =  814 bits (421), Expect = 0.0
 Identities = 436/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatcttcagagcacaaaagctagactcccccataatgctttaatatccattccctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatcttcagagcacaaaagctagactcccccataatgctttaatatccattccctgac 260

                                                                       
Query: 61  aattatcataggcacagtttcattaatgttacattctgttctattaccctaatgcattca 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aattatcataggcacagtttcattaatgttacatcctgttctattaccctaatgcattca 320

                                                                       
Query: 121 aagatgtattatttcccatggtaataaaattgatacctcctcggcaatattatgagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatgtattatttcccatggtaataaaattgatacctcctcggcaatattatgagaaaa 380

                                                                       
Query: 181 tggaatacatgatagatagtagatttttttttaaaaatcatgtcaaaccacagttctgcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tggaatacatgatagatagtagattttttttaaaaaatcatgtcaaaccacagttctgcc 440

                                                                       
Query: 241 atttactaacttttgttataaatgagcactctaaccatagacttctttactcttaaatga 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 atttactaacttttgttataaatgagcactctagccatagacttctttactcttaaatga 500

                                                                       
Query: 301 atgtaatttccatgtaacataagtttcagaattaaataaataaaggctcccgataaatca 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 atgtaatttccacgtaacataagtttcagaattaaataaataaaggctcccaataaatca 560

                                                                       
Query: 361 actgtatgaaaatcaggtacatgaagacattttatatgtctttctgaaattaaaattcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtatgaaaatcaggtacatgaagacattttatatgtctttctgaaattaaaattcat 620

                                
Query: 421 aacatttatataataaacctt 441
           |||||||||||||||||||||
Sbjct: 621 aacatttatataataaacctt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)