BAC Information

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BAC

Clone NameMSMg01-130D12
Chromosome5 (Build37)
Map Location 9,910,088 - 9,910,630
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130D12.T7 (MSMg01no130_d12.b1)MSMg01-130D12.TJ (MSMg01no130_d12.g1)
ACCAG338028AG338029
length719720
length of high quality
(start - end)
629 (65 - 693)580 (70 - 649)
definitionCHROMAT_FILE: MSMg01no130_d12.b1 PHD_FILE: MSMg01no130_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:54 2005CHROMAT_FILE: MSMg01no130_d12.g1 PHD_FILE: MSMg01no130_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TCCAATTTCAATGGTGATAACTTTTTATATGGAAATCTTTGGGACAAGAG
TGATGCTAGATACAAACCTACACAACATGTCTGACTGATTATGAGAGAGG
AAGAGGGTGGGCAGGCTCCTGGATCAACCTTCTGTTTTTATTACTTATGA
CTTTTTTTAATTTCAGATTTTCAAATGCTGAAATCAAGCTAATAGATCAA
TCAAATTACAATTAACTAAACAGGAAACAAGAGTTTTCTAAAAAAATTAA
ATCATTTTTACAAGAATATTTTTAATTTTTCTAATAATTTTAAATTATAT
GGAATGCTTCTAAGCATAACTAATCATGGTTACAAAGACTGTAAGAATAT
CGTTGGAGAGCCCAAACTATCATCACCTTTTCTAGAGACTTCCACTTCTA
TCTTCAATACTCTATATTAAAAGTGGCCTATTCTAATTATTCCAATAATC
CTCTATACAGCAAAATACTGCAAATTAACAGTAACACTGTTATCTTGGGG
GCAACCAACAACTGTCTGAATGGACTCAACGCCTGTTCAATATGAAGAAA
CACATGTGATGCTATAAACCTACCTAAGATTCTATGGCTAAAGTGGTCAA
AGGCCATAGAGAACATGCTATTACCATTTCGCTTAATGAATATAATATTC
AACTGCCCTCTTAATACTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATAGAAGTTTATCTATTCAGTAACATTCAA
ATTTATTTCTAGTAGAGCCAGTGAAACTAATTAGGCATTACAAAGAACCG
AGCCAGAGTAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGAGACAGTAG
CCAGCCTTACCCAGAAAAGGTAATAAACAATGGCCTAGCTAATAGGTGAG
TTTACCATGAAAGTTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGGC
CCAAAGAAACAGCATAAATCAGGCATTTTCTAAGAACCCCTGGTGGTGGG
CTTAACAATAGACTAACATTACACCTGGTTCCCTTCTTAGTGGCAGAGGC
CTGGTCCCCGCCTTCTTTCAATGTATACATTCCTTATGTTTTGTGTCACT
GTAACTCGGTGGATGTATGGTGGATGTATCTCGCTTGGTTTCTTGTTATT
CTTCTGTATAAAAAGTTTTGATGCTCGACTTAACAATTACATCCAGATTC
TACACAATCTCCTGTGTTGCGTCTGTCTGTCATTAATTCGATGACTCCTT
GTCCACCTGCAACTAGAGACCCGTTCTACGCAGACTAGGGACCAAGAAGG
CCTGTGGCAGGTCTGCAAATTGTTGCTAAACTAGCGTACATTTTAACGAG
TCAGAAAATGCACGGCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_d12.b1 MSMg01no130_d12.b1 CHROMAT_FILE:
MSMg01no130_d12.b1 PHD_FILE: MSMg01no130_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:54 2005
         (629 letters)



>mm_chr5_9909602_9910630
          Length = 1029

 Score =  975 bits (504), Expect = 0.0
 Identities = 535/550 (97%), Gaps = 9/550 (1%)
 Strand = Plus / Minus

                                                                        
Query: 82   agaggaagagggtgggcaggctcctggatcaaccttctgtttttattacttatgactttt 141
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1029 agaggaagagggtgggcaggctcctggatcaaccttccgtttttattacttatgactttt 970

                                                                        
Query: 142  tttaatttcagattttcaaatgctgaaatcaagctaatagatcaatcaaattacaattaa 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  tttaatttcagattttcaaatgctgaaatcaagctaatagatcaatcaaattacaattaa 910

                                                                        
Query: 202  ctaaacaggaaacaagagttttctaaaaaaattaaatcatttttacaagaatatttttaa 261
            |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 909  ctaaacaggaaacaagagttttctaaaaaaattaaatcatttttacaagaa-------aa 857

                                                                        
Query: 262  t--ttttctaataattttaaattatatggaatgcttctaagcataactaatcatggttac 319
            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tcattttctaataattttaaattatatggaatgcttctaagcataactaatcatggttac 797

                                                                        
Query: 320  aaagactgtaagaatatcgttggagagcccaaactatcatcaccttttctagagacttcc 379
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 796  aaagactgtaagaatatcgttggagaggccaaactatcatcaccttttctagagacttcc 737

                                                                        
Query: 380  acttctatcttcaatactctatattaaaagtggcctattctaattattccaataatcctc 439
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 736  acttctatcttcaatactctatactaaaagtggcctattctaattattccaataatcccc 677

                                                                        
Query: 440  tatacagcaaaatactgcaaattaacagtaacactgttatcttgggggcaaccaacaact 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  tatacagcaaaatactgcaaattaacagtaacactgttatcttgggggcaaccaacaact 617

                                                                        
Query: 500  gtctgaatggactcaacgcctgttcaatatgaagaaacacatgtgatgctataaacctac 559
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616  gtctgaatggactcaacgcctgttcaataggaagaaacacatgtgatgctataaacctac 557

                                                                        
Query: 560  ctaagattctatggctaaagtggtcaaaggccatagagaacatgctattaccatttcgct 619
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 556  ctaagattctatggctaaagtggtcaaaggccatagagaacctgctattaccatttcgct 497

                      
Query: 620  taatgaatat 629
            ||||||||||
Sbjct: 496  taatgaatat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)