BAC Information

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BAC

Clone NameMSMg01-130E08
Chromosome5 (Build37)
Map Location 56,736,275 - 56,736,587
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130E08.T7 (MSMg01no130_e08.b1)MSMg01-130E08.TJ (MSMg01no130_e08.g1)
ACCAG338068AG338069
length7091,241
length of high quality
(start - end)
323 (41 - 363)855 (81 - 935)
definitionCHROMAT_FILE: MSMg01no130_e08.b1 PHD_FILE: MSMg01no130_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:59 2005CHROMAT_FILE: MSMg01no130_e08.g1 PHD_FILE: MSMg01no130_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCCAGTATTTTTGATGCATAAAAATTTATATAAGTGTGAAGCACATATC
TGAATATATTTGATATGAAGTGCTTTGATAATTAAAAGAATCACCATCCA
AATATCTGAAGCTAAGAACTTTATAATATTTTCATATTTTAGAATAATTT
TCATCAGGTAACAATATGTTATCATGATTCGTTTTTTTAACCCACTGGGA
AAGATCAAAGACTTAGATTCAATTCAAATTTTATTAAATGAATTTGTTGT
TACTGCTAGCAGAGGGAAGGCAGCCTAATAGGCAAATAACATACAATACA
AGAGGTTCTAATGTTTTTGTTTACCCCCCCGCATATCAAAGTTGGACATT
GAAATCACCAATGGAACACGTGGCTGGAAAAGAAAATTGTTTTACTCCCT
CAGTTGTTCCTCTTTTCTTGATTGGTAATAAAAAATCTTCTTCTCAGTTT
CAAAGCAATAAGGCAGTTTATGAAGGCAGAAAGTAAGGAGTTAAATACCT
CTCGGCAAGACCACCACTATCTTATTCTGATCTTCCCTGAAGTCCCTCGG
GATCTCCCATGCATTCCAGAGCAGAGATCAATGGCACTTCAGGGATACCT
GGTACCATATAATTTTTCTTTGGCCATCACAAGATGTTAGGTGTACATTA
TTACATACG
NCCCACTTTNNNNNNAAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTATCTCTGGACCC
CATTTTTAACAGGGTTACTTGGTTCTCTGAAGTATAATTTCTTGAGTTCT
TTATATATGTTGGACAGTATCCAAATTAACAAAATCAGAAATGAAAGTGG
ACACCTAACAATAGAAAGTGAGAAAACCCAAAATATCATCAGATCCTACT
ACAAAAGCATATACTCAACAAAACTGGAAAACCTGGATAAAATTGATAAT
TTTCTAGACAGATACCAGGAACCAAAGTTAAATCAGGATCATATTAATGA
TCTAAACAGTCCCTTATGCTCTAAAGAAATAGAAACAGTCATTAATAGTC
TCCCAACAACAACAACAACAACAACAACAAAAACAAAACAACAACAACAA
CAACAACAACAACAACAACAAAACCCCAAAAAACAAAAGTTTAGGACAAG
ATGGGTTTACTGCAGAGTTTTATCAGATCTTCAAAAAAGAGCTCACACCA
ATACTCCTCAAACTATTCCACAAAATAGAAACAGAAGGAACACTACCCAA
TTCGTCCTATGAAACCACTATTACTCTCATATTTAGACCACACAAAGGCC
CAACAAAGAAAAATAACTTCAGACCAATTTTCTTTATGAATATTGATGGA
AAAATTACTCAATAAAATTCTCACAAATTGAATCCAAGAACACATCCAAA
CGATCATCCATCATGATCAAGTAGGCTTCATTCCAGGGATGCAGGGATGG
TTTAATATTTGGAAATCCATCAACATAATCCACTGTTGGGAGCCGCCCTC
ACATTTGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAAC
ATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTT
CCCGTGATGACAACTGGGCCGATGGGCTGTCGCCCATCAGGGAGTAATAC
GTCCTAAGCGGAGAATAATTCTCCTTATAGGGGAGGGGGTTTCCCCCTTT
GTTCTCTGGGTCTGGGTCTTGTTTCTGGGTCCTAAAAAATAAAGCAAAAA
AGATCTTGGGCTCCTGGCGCTCTTGGTCCGGGCCTTGGGTCTTGGTCCTT
AAAAGGAAAAAAAAAAAGCTTTTGTTTTGGCCCCTTGGGCTCGGGGCTCT
GAAAAGAAAAAAAAAAAATTTTGCCCAAAAAATCCGATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_e08.b1 MSMg01no130_e08.b1 CHROMAT_FILE:
MSMg01no130_e08.b1 PHD_FILE: MSMg01no130_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:59 2005
         (323 letters)



>mm_chr5_56736068_56736789
          Length = 722

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%), Gaps = 5/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcc-agtatttttgatgcataaaaatttatataagtgtgaagcacatatctgaata 66
           ||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 208 gaattccaagtgtttttgatacataaaaatttatattagtgtgaagcacatatctgaata 267

                                                                       
Query: 67  tatttgatatgaagtgctttgataattaaaagaatcaccatccaaatatctgaagctaag 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatttgatatgaagtgttttgataattaaaagaatcaccatccaaatatctgaagctaag 327

                                                                       
Query: 127 aactttataatattttcatattttagaataattttcatcaggtaacaatatgttatcatg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aactttataatattttcatattttagaataattttcatcaggtaacaatatgttatcatg 387

                                                                       
Query: 187 attcgt-ttttttaacccactgggaaagatcaaagacttagattcaattcaaattttatt 245
            || || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 -tt-gtgttttttaacccactgggaaagatcaaagacttagattcaattcaaattttatt 445

                                                                       
Query: 246 aaatgaatttgttgttactgctagcagagggaaggcagcctaataggcaaataacataca 305
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 aaatgaatttgttgttactgctagcagagggaaggcagcctaataggcaaataa-ataca 504

                           
Query: 306 atacaagaggttctaa 321
           |||||||||| |||||
Sbjct: 505 atacaagagggtctaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)