BAC Information

Click to search

BAC

Clone NameMSMg01-130J12
Chromosome5 (Build37)
Map Location 53,198,284 - 53,198,394
singlet/doubletsinglet
Overlap geneZcchc4
Upstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b
Downstream geneAnapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130J12.T7 (MSMg01no130_j12.b1)MSMg01-130J12.TJ (MSMg01no130_j12.g1)
ACCAG338308AG338309
length722730
length of high quality
(start - end)
170 (109 - 278)109 (131 - 239)
definitionCHROMAT_FILE: MSMg01no130_j12.b1 PHD_FILE: MSMg01no130_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:27 2005CHROMAT_FILE: MSMg01no130_j12.g1 PHD_FILE: MSMg01no130_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAATT
CCTTCATGTTTCTGAAAAGTGGGCACATGCCTTTAATCCCAACACTCCAG
AGGCTTAGGCAGGTGGATCCCTGTGAGATAGACTGGTCTACAGAATGAGT
TCCAGGATAGCCAAGGGTACATAGAAAAACCTTATCTCCAAAAATTTTTT
TTAATTTAAAAAAAATAAAAATAAAAGTGTGGAGGTGAATAAGGGTGAGG
TAGGTCATTTGGTGAGATGCCCCAGGTCACACATCATAAAATGAGCTTGT
GAGCCCCAAGCCCAGGCCCTTGTTCCTGATTTCTCTTCCCTCTTCAGAAT
GCAGGTGCATCTTCTGCCCCCATTGACCCTGCCTGTGTCCTAAGCCTGGA
GCCATTTGGACTTTCTGCAACCCTGAATATCTCTGATGTCTTGAAAGTTT
GCCTCCAAGGTGCCAGGAGGGATTTCTCAGAACGCGTGAAATGCCGAAGG
CACTCAGCATATTACCCATATTGCCCTGGTGTCAAGTCTGTTCTTGGCAT
TACACGGCGGATACTTGAAGAGTCACATAGGATAGTGCCCTGTCCAAATT
CCTTAATGGATAAAGAGCTGGATAGTATTGTCTGCTTGCTCGATTGTGTT
TACACTATTCCTCTCATGTCAGCGCTCCACCCGAGTTTTATACCCCGCGT
TTCCTCTGTTTGGTTTTTATTT
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCAGAAATATCTTAAGGAAGAGGAATGCAAGGGGGTGATTA
TGGTGACAGACCCTCCCCCTGGCGGCTTGTTGGAACCTCTGGCTATTACA
TTCAAGAAGTTAATTGCTATGTGGAAAGAAGGTCAAAGTCAAGGTGCCTT
TTTTTTTTAAACTTTTTTTGTTAATTACTGCAAAATGAGCTCGCGCTTAT
GTGCCTGCTTCTGCTTCCTGTCAACACGAGCCAAGCCTAGCAGTTACGGA
GTGTGCAGTTCTGGGTTTTCTGTAAAAGCACATTTGACTGGATGATGGCA
AACTTTTTTATCCGCCCCCCCCCCCCTTACCCTAGTCATGTTTTTTAAAT
GGCTTCTCACGACCACGGATAGAAAAATTATGGAGCATTGTGAAGCACAA
CAGTGACCTGCTGTCATTTTGCCTATCATATACTCTACAAGCGTCCCCCG
TGCGCGTATGAATTTGGATGCTACTAACACATCAATGAGCTTTGTCTCCT
GTCCCTACAGTTTCTCCTATTGCTGTGATAAAGTCCCTTGATCAATATTA
CCTGGGCCTTAGATCGGTTTATTTTGTCCCACACCCTTCTGATTCACATT
TCCCTGCACTTTTAGTTCTCTTTCCCTACCCCTTTTTCCTCCCCTTTTCC
TTCCCCTCTTTTTTTTCTTCCCCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_j12.g1 MSMg01no130_j12.g1 CHROMAT_FILE:
MSMg01no130_j12.g1 PHD_FILE: MSMg01no130_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:27 2005
         (109 letters)



>mm_chr5_53198084_53198594
          Length = 511

 Score =  180 bits (93), Expect = 2e-50
 Identities = 106/111 (95%), Gaps = 2/111 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaacctctggctattacattcaagaagttaattgctatgtggaaagaaggtcaaagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tggaacctctggctattacattcaagaagttaattgctatgtggaaagaaggtcaaagcc 260

                                                              
Query: 61  aaggtgcctttttttttta--aactttttttgttaattactgcaaaatgag 109
           ||||||||||||||||||   || |||||||||||||||||||||||||||
Sbjct: 261 aaggtgcctttttttttttttaattttttttgttaattactgcaaaatgag 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 511
Length adjustment: 8
Effective length of query: 101
Effective length of database: 503
Effective search space:    50803
Effective search space used:    50803
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)