Query= MSMg01no131_i11.b1 MSMg01no131_i11.b1 CHROMAT_FILE:
MSMg01no131_i11.b1 PHD_FILE: MSMg01no131_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:47 2005
(627 letters)
>mm_chr5_103901840_103902866
Length = 1027
Score = 1149 bits (594), Expect = 0.0
Identities = 618/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 gctttatcaaattcttcagttttggacagtaagctctacatagatttttgtccgctaccc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 gctttatcaaattcttcagttttggacagtaagttctacatagatttttgtcagctaccc 260
Query: 61 taatagaacatagaaccaagaggtctgtaaattctctccatgaactgcttgaactagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatagaacatagaaccaagaggtctgtaaattctctccatgaactgcttgaactagagc 320
Query: 121 aggaatgtgcacatgagatgattttattctgaatttcttaattagtccctgttgcctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaatgtgcacatgagatgattttattctgaatttcttaattagtccctgttgcctttg 380
Query: 181 ctgactgttcccttataccatgtttttagctcgattacaatcatttacctttttatttta 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ctgactgttcccttataccatgtttttagcccgattacaatcatttacctttttatttta 440
Query: 241 tttatttttggagacaagagtcttgctatgtaacccaagatgtccttaaactactaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttttggagacaagagtcttgctatgtaacccaagatgtccttaaactactaaata 500
Query: 301 gcccaggttgtcctcaggctcataacgtgcctgccctccagcctcagcatcctgagtgct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccaggttgtcctcaggctcataacgtgcctgccctccagcctcagcatcctgagtgc- 559
Query: 361 gggattacagtcgcacagtccaaggtggaattctaaaggaaatggcagggcccaagaaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 gggattacagtcgcacagtccaaggtggaattctaaaggaaatggcagggcccaggaaga 619
Query: 421 aagaagggctgttaaattgtgataggtttttagtttgagagaacactgaaatatgcttga 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 aagaagggctgttaaattgtgataggtttttagtttgagagaacactgaaatgtgcttga 679
Query: 481 agttgtttctttccataccaagtttctaactgcacccctggctgattgagcttgaacagc 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 agttgtttctttccataccaagtttctaactgcacccctggctggttgagcttgaacagc 739
Query: 541 aactcctcccgtggaatgttagtagtctccagaaagaaccacgttgactgctggagttgg 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aactcctcccgcggaatgttagtagtctccagaaagaaccacgttgactgctggagttgg 799
Query: 601 ttcatatcaggtttactttttcataa 626
||||||||||||||||||||||||||
Sbjct: 800 ttcatatcaggtttactttttcataa 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_i11.g1 MSMg01no131_i11.g1 CHROMAT_FILE:
MSMg01no131_i11.g1 PHD_FILE: MSMg01no131_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:47 2005
(185 letters)
>mm_chr5_104049343_104049927
Length = 585
Score = 350 bits (181), Expect = e-101
Identities = 184/185 (99%)
Strand = Plus / Minus
Query: 1 atctccagcttggttgctgtcagatcattagatcttctcttgtcctcaccaccatcgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctccagcttggttgctgtcagatcattagatcttctcttgtcctcaccaccatcgtta 326
Query: 61 aatgtatcatgggatcagatgatcctgtggaggccggggacaacagcctggggactcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtatcatgggatcagatgatcctgtggaggccggggacaacagcctggggactcgag 266
Query: 121 gtttcacaaccaccaagacttggctttttacagcgaggaatttcagccttttgctgctgg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttcacaaccaccaacacttggctttttacagcgaggaatttcagccttttgctgctgg 206
Query: 181 agcca 185
|||||
Sbjct: 205 agcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space: 102129
Effective search space used: 102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
