BAC Information

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BAC

Clone NameMSMg01-132F16
Chromosome5 (Build37)
Map Location 106,519,336 - 106,519,625
singlet/doubletsinglet
Overlap genenone
Upstream geneBC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
Downstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132F16.T7 (MSMg01no132_f16.b1)MSMg01-132F16.TJ (MSMg01no132_f16.g1)
ACCAG339621AG339622
length709684
length of high quality
(start - end)
290 (66 - 355)480 (67 - 546)
definitionCHROMAT_FILE: MSMg01no132_f16.b1 PHD_FILE: MSMg01no132_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:51 2005CHROMAT_FILE: MSMg01no132_f16.g1 PHD_FILE: MSMg01no132_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGCCCATCCCGGGATGTTTGAGACTGTCTTAAAAAAGAAAAGCCAACAA
TAATAACAACAAGAGGAAGCGAGGGAAAGAGGGAAGGTTGGTCACAAAGG
AAAGTCAATTACATTTTCATGGCCTTCTTCTTCTTCTGGCCTGAGTCAGG
GGTTTGGATCATTCTCTCGAATTTCCAGAAAAAGCAGAGTAGTCACATTA
AAAGATTCTGCAGAGGTTATCAGTTAGAATATAAGCTGCATGCCCACACA
TCTGTGTGAAATGAAGAATACATGGTATTTAGGGAGTCTTGACCGAGGGA
GAAGGTTCCATTGTTACATGACCCCCCGCACTTTGTTGAGGGAGCGAGGA
TTTCCTGCAGGTTTCCTTGAAAAAAAGAATAGATGCCTCCGGGTGTGTCT
TTGTGCTTGAACCTCTGTCAGTTAATTGGGACACCTGGCAGAAACTTGAG
AGTCACATTTTTCTGATGGGACACTACTGCTCTGTTGTGGGGGCCACACT
ACAACGCTTCTGACATGTGTGATGACAGAGCTCCACACACATTTGCATCA
TCTACGCATCTTAACTGCAACCCCCATGATATTTGGTCCGTTTCAGCTAC
CTCCTCAGACTCGCCTACTAAATGCCCCTTTACTTCACTTACGTGGGGAA
AAACTGCTT
ATGCTGTGGGAGGCCTGGCGGCCGCCTGGTTCTAAAATAGGAGGTGACCT
ATAGAAGTTTCGCGAAATTCTTTGGTGAAGTTTCTGATTTTCATTTTAAA
TTCTGTGTCCTCAGTTTCACTTAGATAACTTTTAAATTGGCAAACATAAC
ATTTCTACAGAACTGGTAGGGTTGGAGAGAAGAACTGCCTTGTTCTTTCA
TATTGTTTGTAATTTTCTGATGAGATTTGGCATGTGGAGTTGTTTTGTTA
GCTCTCAACTCGGTCTGATATAAACGGGTTGTGACAGGGGAGAAGTGGAT
GTTCAGGTGGGTTGGAACTAAAGGATGGGCATGGCTTGTGGAATGAAGTA
AGGTGGACTGGGTTGGTGGACAGGATGTGGTCCAAGCCTGGAAGGTGGGC
ATTGGATCAGGCTTGGTGCGAAGGTTGGATGTAGCATGGGAGGAGTGGGT
AGGTTGACAGATAGGTAGAGAGTATTCTGGCAGAAACCTAGACCAGGGCA
TTAGGTGTGGGGCCGGGGATATACCTGAAGGGCTTGGGGGAAGGGGTGGA
TGGGTACAGTCAGAAGACTCACTGAGCTAGACCTAGGAGAAGGAAATGGC
AGATCTGCTGGGTGGTAGAGGTAGAGTTTTAACAGGTCCTTCCGTTTGAC
AATATAATAGCTATGTTATACTGCGGTGATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_f16.b1 MSMg01no132_f16.b1 CHROMAT_FILE:
MSMg01no132_f16.b1 PHD_FILE: MSMg01no132_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:51 2005
         (290 letters)



>mm_chr5_106519136_106519825
          Length = 690

 Score =  468 bits (242), Expect = e-136
 Identities = 278/290 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgagactgtcttaaaaaagaaaagccaacaataataacaacaagaggaagcgaggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 490 tgtttgagactgtcttaaaaaagaaaagccaacaataataacaacaagaggaagggaggg 431

                                                                       
Query: 61  aaagagggaaggttggtcacaaaggaaagtcaattacattttcatggccttcttcttctt 120
           | ||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 430 acagagggagggctggccacaaaggaaagtcaactacattttcatggccttcttcttctt 371

                                                                       
Query: 121 ctggcctgagtcaggggtttggatcattctctcgaatttccagaaaaagcagagtagtca 180
           |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||
Sbjct: 370 ctggcctgagtcaggggtttggatcattctctcgtatgcccagaaaaagcagagtaatca 311

                                                                       
Query: 181 cattaaaagattctgcagaggttatcagttagaatataagctgcatgcccacacatctgt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cattaaaagattctgcagagattatcagttagaatataagctgcatgcccacacatctgt 251

                                                             
Query: 241 gtgaaatgaagaatacatggtatttagggagtcttgaccgagggagaagg 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgaaatgaagaaaacatggtatttagggagtcttgaccgagggagaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)