Query= MSMg01no132_g22.b1 MSMg01no132_g22.b1 CHROMAT_FILE:
MSMg01no132_g22.b1 PHD_FILE: MSMg01no132_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:57 2005
(644 letters)
>mm_chr5_126354849_126355893
Length = 1045
Score = 721 bits (373), Expect = 0.0
Identities = 425/455 (93%), Gaps = 26/455 (5%)
Strand = Plus / Minus
Query: 2 gaattcccgcgttcttac----cccaactcaatgtgaaacctatgacctcagcgctgtgg 57
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaattcccgcgttc---cagagcccaactcaatgtgaaacctatgacctcagcgctgtgg 394
Query: 58 cggcagtgtacatcccataatcccaacaccccagaaatgtgtaccctataacgccagggc 117
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 393 cagcagtgtacatcccataatcccaacaccccagaagtgtgtaccctataacgccagggc 334
Query: 118 tgagacaggagggtcccagatgctcactggccaactctgcatcagccagcacctcagaaa 177
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgagacaggaggatcccagatgctcactggccaactctgcatcagccagcacctcagaaa 274
Query: 178 aaaaacaagataaacagtggctgaagaagacattcagcatcaacttctggccaaacacat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaaaacaagataaacagtggctgaagaagacattcagcatcaacttctggccaaacacat 214
Query: 238 acagatgtgcatagacagagacagagac--agacagacagacagacagacagacag--ag 293
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 213 acagatgtgcatagacagagacagagacagagacagacagacagacagacagacagacag 154
Query: 294 actgactgactgactgactgactgacacagagagacagagagagaaacaataaattaaac 353
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 acaga--gactgactgactgactgacacagagagacagagagagaaacaataaattaaac 96
Query: 354 tcagagacttcacactgagttgtttgtcatacgagctgggataagggaga---------- 403
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tcagagacttcacactgagttgtttgtcatacgagctgggataagggagaatgacacagg 36
Query: 404 -atgg--ggcagggaggtttctgtgtagggtagaa 435
|||| ||||||||||||||||||||||||||||
Sbjct: 35 gatggcaggcagggaggtttctgtgtagggtagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_g22.g1 MSMg01no132_g22.g1 CHROMAT_FILE:
MSMg01no132_g22.g1 PHD_FILE: MSMg01no132_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:57 2005
(607 letters)
>mm_chr5_126256384_126257390
Length = 1007
Score = 913 bits (472), Expect = 0.0
Identities = 543/570 (95%), Gaps = 7/570 (1%)
Strand = Plus / Plus
Query: 1 caggaagggttatcaagaatgttcaagaaatggctgaccattctttgaggcaggaagaag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caggaagggttatcaagaatgttcaagaaatggctgcccattctttgaggcaggaagaag 260
Query: 61 gtgactttggcttgacttcagctagaacaccatgatctctggggtagagtgagcagagtc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgactttggcttgacttcagctaggacaccatgatctctggggtagagtgagcagagtc 320
Query: 121 caggggaggtcatgaccacatgaaactcaacgtgtcccagcacagtgctcattcagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggggaggtcatgaccacatgaaactcaacgtgtcccagcacagtgctcattcagaagg 380
Query: 181 ggagagattttctctggcaggctttgatcctttcctgagaatcatacggatggaagtcag 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagagcttttctctggcaggctttgatcctttcctgagaatcatacggatggaagtcag 440
Query: 241 attcttcaccgagggcaccatggagtagaagagcacagtctttagtcctgtgtcctgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcttcaccgagggcaccatggagtagaagagcacagtctttagtcctgtgtcctgccc 500
Query: 301 tgtgtaggagcctccttctgatggctcgcttcatgattccgggctcagtaacacaagctt 360
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 501 tgtgtaggagcctccttctgatggctcgcttcacgattctggcctcagtaacacaagctt 560
Query: 361 aagtcccttccacattccctgaaagacagattttcttgcttgttgtagtgctcagttgtt 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtcccttccacattccctaaaagacagattttcttgcttgttgtagtgctcagttgtt 620
Query: 421 aaaaagcaaagagaaggctggggaagagtatgcttcttcctttccttctttctttctttc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaagcaaagagaaggctggagaagagtatgcttcttcctttccttctttctttctttc 680
Query: 481 tttctttctttctttctttctttctttctttctttctttctttctttctttctttctttc 540
|||||||||||||||||||||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |
Sbjct: 681 tttctttctttctttctttcttccttccttccttccttccttccttccttccttccttcc 740
Query: 541 tttct------t-tctttctttctttcttt 563
|| || | ||| |||||||||||||
Sbjct: 741 ttcctcccccctctctctctttctttcttt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
