Query= MSMg01no132_j12.b1 MSMg01no132_j12.b1 CHROMAT_FILE:
MSMg01no132_j12.b1 PHD_FILE: MSMg01no132_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(320 letters)
>mm_chr5_39703745_39704464
Length = 720
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 1 acaaatgtaaaaaaattggatttgcatatacaaaaataatctttaactaatttctcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatgtaaaaaaattggatttgcatatacaaaaataatctttaactaatttctcctaa 260
Query: 61 catacacacaaaatttgtcacaattataaatatctgatgtataagatatataaccaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacacacaaaatttgtcacaattataaatatctgatgtataagatatataaccaaaaa 320
Query: 121 attaaaaaagataagccaaaattctttatcttatgtaaaaattttcattaaatggaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaaaaagataagccaaaattctttatcttatgtaaaaattttcattaaatggaaaaa 380
Query: 181 tctgttcttgattgttaacaataccagcttctaactagggtaaaaatgtatatctgacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttcttgattgttaacaataccagcttctaactagggtaaaaatgtatatctgacac 440
Query: 241 atgtctttcatcttaaatacaggaggaacccgtaaatctcaacaataggaagattagaaa 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 atgtctttcatcttaaatacaggaggaacccataaatctcaacaataggaagattagaaa 500
Query: 301 gaaatttagaacagaatgca 320
||||||||||||||||||||
Sbjct: 501 gaaatttagaacagaatgca 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_j12.g1 MSMg01no132_j12.g1 CHROMAT_FILE:
MSMg01no132_j12.g1 PHD_FILE: MSMg01no132_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(567 letters)
>mm_chr5_39841590_39842555
Length = 966
Score = 1007 bits (521), Expect = 0.0
Identities = 554/565 (98%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 1 ctaaaagtagagggaggtaagaaggcccaagtacaacccaaacgtactgaatgattggtc 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 ctaaaagtagaggaaggtaagaaggcccaagtacaacccaaacttactgaatgattggtc 626
Query: 61 agcagaatttgattctgatgattagcagtcaagatgccaatatgggatgggctaagctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcagaatttgattctgatgattagcagtcaagatgccaatatgggatgggctaagctcc 566
Query: 121 tcataatactgagctgtcttttttgactgaacttcacaattttcatgtccagggtgtgtt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcataatattgagctgtcttttttgactgaacttcacaattttcatgtccagggtgtgtt 506
Query: 181 acagtgataagatcctgggatagaatggccactgaacaacagtatcaaagacagacatgg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 acagtgataagatcctgggatagaatggccattgaacaacagtatcaaagacagacatgg 446
Query: 241 ttaaaaggataaagcactgagaatctagaggtataccctaagtcaaatactggtcttata 300
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 445 ttaaaaggagaaagcactgagaatctagagctataccctaagtcaaatactggtcttaca 386
Query: 301 gttacataaatagttaagatgaaggcttactttgtaaagattttgtcaaaaaaaaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gttacataaatagttaagatgaaggcttactttgtaaagattttgtc-aaaaaaaagaat 327
Query: 361 aaacatggtagataagagccattcatctgtggttaagaatagctactgaatggtagtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaacatggtagataagagccattcatctgtggttaagaatagctactgaatggtagtgca 267
Query: 421 agtaatgttgatgacaataatatagatctttcagaataaataaaacaatagaaaatattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtaatgttgatgacaataatatagatctttcagaataaataaaacaatagaaaatattc 207
Query: 481 aaaccatgctagttagtttattgttaaataacaagctagtatcatctaggaagacggaac 540
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 206 aaaccatgcgagttagtttattgttaaataacaagctagtatcatctaggaagagggaac 147
Query: 541 ctaacttgagaaaatgcctgcatca 565
||||||||||||||| |||||||||
Sbjct: 146 ctaacttgagaaaattcctgcatca 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space: 532492
Effective search space used: 532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
