Query= MSMg01no132_l06.b1 MSMg01no132_l06.b1 CHROMAT_FILE:
MSMg01no132_l06.b1 PHD_FILE: MSMg01no132_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:17 2005
(374 letters)
>mm_chr5_81832036_81832809
Length = 774
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Minus
Query: 1 tttacagatggcagagagcactacataggaccaacagcagagggagagaaaaataaaacg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 tttacagatggcagagagcactacataggaccagcagcagagggagagaaaaataaaacg 248
Query: 61 ggaaggaaaaaggagggaggaattttcttttatcatttgttggggagggtctggtgctat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggaaggaaaaaggagggaggaattttcttttatcatttgttggggagggtctggtgctag 188
Query: 121 gtatgtaaatgttaaagtctgaaccccaaaatgtggttgtcccaagaaaagtgaattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtatgtaaatgttaaagtctgaaccccaaaatgtggttgtcccaagaaaagtgaattctc 128
Query: 181 tcacataccagcctttgttgtgtaaatcttcctctccaatttagaagtatagggtaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcacataccagcctttgttgtgtaaatcttcctctccaatttagaagtatagggtaaata 68
Query: 241 aaagtggcaacagcctattactgggagaatagaggtatgcagggcttcagttaccagggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaagtggcaacagcctattactgggagaatagaggtatgcagggcttcagttaccagggt 8
Query: 301 ggggatc 307
|||||||
Sbjct: 7 ggggatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_l06.g1 MSMg01no132_l06.g1 CHROMAT_FILE:
MSMg01no132_l06.g1 PHD_FILE: MSMg01no132_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:17 2005
(603 letters)
>mm_chr5_81771821_81772822
Length = 1002
Score = 1129 bits (584), Expect = 0.0
Identities = 598/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 1 atgagatatcttttgactttgaattcacccaattcatattttcattatttgtacatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgagatatcttttgactttgaattcacccaattcatattttcattatttgtacatcaaa 260
Query: 61 ggaaacagttggcaaagatgtttatttatgtagaaatcaatgactttagttttcagtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaacagttggcaaagatgtttatttatgtagaaatcaatgactttagttttcagtgtg 320
Query: 121 gcatatttccttgagacgacgatgctgtatatgtttggaaataatagcagttaagtaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatatttccttgagacgacgatgctgtatatgtttggaaataatagcagttaagtaaat 380
Query: 181 taaatgagattttcagactgtggttgagatattgcctgcaaagaaagaaatttcacgtgg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatgagactttcagactgtggttgagatattgcctgcaaagaaagaaatttcacgtgg 440
Query: 241 tcagaagttgtcccaagggtaagaatgtaggtggagaaaggtagtaaaaatgtcgtcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaagttgtcccaagggtaagaatgtaggtggagaaaggtagtaaaaatgtcgtcata 500
Query: 301 tgcatgtccattgctgtctcgcaggtcagttgttccctgggggtctttctaggttcataa 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatgtccattgctgtctcgcaggtc-gttgttccctgggggtctttctaggttcataa 559
Query: 361 ggaaacaatttaccatacggctgggatatagctcagtaataaaacacttgtgagaatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaaacaatttaccatacggctgggatatagctcagtaataaaacacttgtgagaatgta 619
Query: 421 ggagacgctgtggttagtcaccaaaacccacacatatacacacacatgtgcccccatgca 480
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggagatgctgtgcttagtcaccaaaacccacacatatacacacacatgtgcccccatgca 679
Query: 481 tacacacataggagaaagagacagagacnaaaagaacaaactaacatttacacatggagt 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 tacacacataggagaaagagacagagacaaaaagaacaaactaacatttacacatggagt 739
Query: 541 ttattcttaaagcaaattgcaaattacactctgtgggtaaattatatttataaatatata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttattcttaaagcaaattgcaaattacactctgtgggtaaattatatttataaatatata 799
Query: 601 tgt 603
|||
Sbjct: 800 tgt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
