Query= MSMg01no132_p01.b1 MSMg01no132_p01.b1 CHROMAT_FILE:
MSMg01no132_p01.b1 PHD_FILE: MSMg01no132_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(504 letters)
>mm_chr5_75867678_75868582
Length = 905
Score = 876 bits (453), Expect = 0.0
Identities = 492/505 (97%), Gaps = 5/505 (0%)
Strand = Plus / Plus
Query: 1 tcttggaagctcacacttactctaacagag-aataaattggggca-aggtgactggactc 58
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||
Sbjct: 201 tcttggaagctcacacttactctaacagagaaataaattggggcaca-gtgactggattc 259
Query: 59 tcccataaggtaataataacaagagcacctcctgccttgggtctatataacttggcaggc 118
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct: 260 tcccataaggtaataataacaagagtacctcctgccctgggtctatatagcttggcaggc 319
Query: 119 agcaaggtcaataacggttagttatgattgttccttgcttcttaggactaggatttaaaa 178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 agcaaggtcaataacggttagttatgattgttcctagcttcttaggactaggatttaaaa 379
Query: 179 tactccattgttttttattgttgttacccagtactagggattaaatgtatagcctcatgc 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tactccattgttttttattgttgttacgcagtactagggattaaatgtatagcctcatgc 439
Query: 239 ttggaagacaccccacgctatgcctcagttctcttttaacattgtattttgagaccaggt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttggaagacaccccacgctatgcctcagttctcttttaacattgtattttgagaccaggt 499
Query: 299 ctcaccaagctgcaagaactggccttgaattcactctacaacccagacagatcttgaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcaccaagctgcaagaactggccttgaattcactctacaacccagacagatcttgaatg 559
Query: 359 tgtggttttcctgcctcagtctcctgaatggttgagattacaggcctggtctatgaagcc 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 tgtggttttcctgcctcagtctcctgaatggttgagattacagtcctggtctatgaagcc 619
Query: 419 ttgacagaaatccctttccctgactcatgctaagtcttactagatcataactgactggca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgacagaaatccctttccctgactcatgctaagtcttactagatcataactgactggca 679
Query: 479 -gattattagggtgtgatctttggg 502
| ||||| ||||||||||||||||
Sbjct: 680 cg-ttattggggtgtgatctttggg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_p01.g1 MSMg01no132_p01.g1 CHROMAT_FILE:
MSMg01no132_p01.g1 PHD_FILE: MSMg01no132_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(424 letters)
>mm_chr5_76001569_76002394
Length = 826
Score = 801 bits (414), Expect = 0.0
Identities = 423/426 (99%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 1 cctattttc-aacaatactccttacaggacagtcctcactgaaataatatctacatatct 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cctattttcaaacaatactccttacaggacagtcctcactgaaataatatctacatatct 567
Query: 60 cccaaatgttacgggg-aaaaaaatgcctggatcatcaagattagactctgggttgttta 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccaaatgttacggggaaaaaaaatgcctggatcatcaagattagactctgggttgttta 507
Query: 119 ccacatatgttggcttccaatctgatcaatctaacacctagagagtccacattactgtga 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 506 ccacatatgttggcttccaatctgatcaatctaacacctagagagtccacattagtgtga 447
Query: 179 catatgctctttacatacatttcagagttaaagaaagaacgcagtgccaggagccaggga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catatgctctttacatacatttcagagttaaagaaagaacgcagtgccaggagccaggga 387
Query: 239 aaaaggcactgtcaggcaaacctggccatctgagttataagccgggggatagaaccaatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaggcactgtcaggcaaacctggccatctgagttataagccgggggatagaaccaatt 327
Query: 299 cttaaaagttaccctctgacttctgaaggtacgtgaatgaacacaggcactcactgataa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttaaaagttaccctctgacttctgaaggtacgtgaatgaacacaggcactcactgataa 267
Query: 359 taaataaaaaatgttttgaaagggcaccactcaagcaccagagtaaatgaaatgcagcta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taaataaaaaatgttttgaaagggcaccactcaagcaccagagtaaatgaaatgcagcta 207
Query: 419 gaagtt 424
||||||
Sbjct: 206 gaagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 826
Length adjustment: 9
Effective length of query: 415
Effective length of database: 817
Effective search space: 339055
Effective search space used: 339055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
