BAC Information

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BAC

Clone NameMSMg01-133B05
Chromosome5 (Build37)
Map Location 52,333,290 - 52,515,766
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133B05.T7 (MSMg01no133_b05.b1)MSMg01-133B05.TJ (MSMg01no133_b05.g1)
ACCAG340149AG340150
length698699
length of high quality
(start - end)
632 (67 - 698)236 (123 - 358)
definitionCHROMAT_FILE: MSMg01no133_b05.b1 PHD_FILE: MSMg01no133_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:47 2005CHROMAT_FILE: MSMg01no133_b05.g1 PHD_FILE: MSMg01no133_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,333,290 - 52,333,921)(52,515,534 - 52,515,766)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAGGGGCGCGGAATTC
TCAAATTTCTTTAAGTTAGAAGAAATAATGCTGTGTACTGGCTGATTTCA
TATCAACTTGACACCCGCTGGAGTTATCACAGAGAAAGGAGCTTCCGTTG
AGAAAATGCCTCCATGAGATCCAGCTGTGGGGCATTTTCTCAATTAGTGA
TCAAGGGGAGAAGGCCCCTTGTGGGTGGGACCATCTCTAGGCTGGTAGTC
CTGGGTTCTATAAGAAAGCAAGCTGAGCAAGCCACGGGAAGCAAGCCAGT
AAGTAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGC
TTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGTG
TAAGCTGAATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGTCGTGATGTT
TGTGCAGGAATAGAAACCCTGACTAAGATATGCTTTATTTTAGCTGTGAT
CAAAACTGATCGCAGTAGATGGTCAAATAAGAACTGCAGACACACTGACA
GCTAATGGCAGTAGAGATTCCTGTCTGTATTTCCAGTGTAGTACACTACA
CTGTACTGCTTTGCAATACAGCACTGGTCGTCATGTAAAGTATTTGAGTT
TTTGAACTAAAGAATTAACCAGGAGGGATCCATAGGATTACCAGAGCA
ACCATGAAGTGGGAGGCTGGCGGCGCCTGTTCCCAACTTTAGGTGAACTA
TAGAAGTTTTCCGAAATTCAGTGTGCTGGCTGACCTCACACCACATGAGG
CTTGGGAGACTATGGGCCAAGGTCTTGAGATCAGAGAGGCAAGTTGCAGG
AGTCCCACCCTGAGGACTTTTCAGTTCCTTAAAGGAAATGTAGGGTTGTG
GGAAATCATGCCAGGTATGAGGGAGGGGACAGGCAGCTAAACTGAAGGAA
TTGGTGTCACTTTTCAGATAGAGATTTTGATCCAAAGATCAATGAAAGTC
ATTAAAGGGAGGCTGGGATGCCACACATGCCTGAGATAGGCCCCTTTACA
CGGTGTTTTTTGCCGCCCCCCCCCAAGTGTGTATGGAAAAGACCTGCTAG
ACTTCTACTGTAAAATGAAGGAAGACAGCGCTGGCAGGGGCCAGGGCTGC
TCTAGGTAGCTAAGTAGGAAGGGATCTTGGATATAGGTTTTGAGAGGTCA
GAATCAGCCTGGTTCACACTGCTGACTCCTTTCTCTTCATATGGCTTCCA
AGACTTCTAGGGTTTGGCCCACAGAGACTTCTATGACCATTTCTGTCATC
TGGCATCCAGGTCCTCTCACATAGTAAAGGTTGGCTGAAGTCAGGCTGTC
AGCGTGACTGAGAACCCAATGCGAGGCCCAGCCAGCATCTTCTCCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_b05.b1 MSMg01no133_b05.b1 CHROMAT_FILE:
MSMg01no133_b05.b1 PHD_FILE: MSMg01no133_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
         (632 letters)



>mm_chr5_52333090_52334121
          Length = 1032

 Score = 1191 bits (616), Expect = 0.0
 Identities = 628/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaagaaataatgctgtgtactggctgatttcatatcaacttgacacccgctggagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 tagaagaaataatgctgtgtactggctgatttcatatcaacttgacacaggctggagtta 260

                                                                       
Query: 61  tcacagagaaaggagcttccgttgagaaaatgcctccatgagatccagctgtggggcatt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagagaaaggagcttccgttgaggaaatgcctccatgagatccagctgtggggcatt 320

                                                                       
Query: 121 ttctcaattagtgatcaaggggagaaggccccttgtgggtgggaccatctctaggctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcaattagtgatcaaggggagaaggccccttgtgggtgggaccatctctaggctggt 380

                                                                       
Query: 181 agtcctgggttctataagaaagcaagctgagcaagccacgggaagcaagccagtaagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcctgggttctataagaaagcaagctgagcaagccacgggaagcaagccagtaagtaa 440

                                                                       
Query: 241 catccctccatggcctctgcatcagctcctgcttcctgacctgcttgagttccagtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catccctccatggcctctgcatcagctcctgcttcctgacctgcttgagttccagtcctg 500

                                                                       
Query: 301 acttcctttggtgatgaacagcagtatggaagtgtaagctgaataaaccctttcctcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcctttggtgatgaacagcagtatggaagtgtaagctgaataaaccctttcctcccc 560

                                                                       
Query: 361 agcttgcttcttggtcgtgatgtttgtgcaggaatagaaaccctgactaagatatgcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcttgcttcttggtcgtgatgtttgtgcaggaatagaaaccctgactaagatatgcttt 620

                                                                       
Query: 421 attttagctgtgatcaaaactgatcgcagtagatggtcaaataagaactgcagacacact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttagctgtgatcaaaactgatcgcagtagatggtcaaataagaactgcagacacact 680

                                                                       
Query: 481 gacagctaatggcagtagagattcctgtctgtatttccagtgtagtacactacactgtac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacagctaatggcagtagagattcctgtctgtatttccagtgtagtacactacactgtac 740

                                                                       
Query: 541 tgctttgcaatacagcactggtcgtcatgtaaagtatttgagtttttgaactaaagaatt 600
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctttgcaatacagcactgatcgtcatgtaaagtatttgagtttttgaactaaagaatt 800

                                           
Query: 601 aaccaggagggatccataggattaccagagca 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 aaccaggagggatccataggattaccagagca 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no133_b05.g1 MSMg01no133_b05.g1 CHROMAT_FILE:
MSMg01no133_b05.g1 PHD_FILE: MSMg01no133_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
         (236 letters)



>mm_chr5_52515334_52515969
          Length = 636

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgagatcagagaggcaagttgcaggagtcccaccctgaggacttttcagttccttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcttgagatcagagaggcaagttgcaggagtcccaccctgaggacttttcagttccttaa 374

                                                                       
Query: 61  aggaaatgtagggttgtgggaaatcatgccaggtatgagggaggggacaggcagctaaac 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 373 aggaaatgtaggattgtgggaaatcatgccaggtatgagggaggggacaggtagctaaac 314

                                                                       
Query: 121 tgaaggaattggtgtcacttttcagatagagattttgatccaaagatcaatgaaagtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgaaggaattggtgtcacttttcagatagagattttgatccaaagatcaatgaaagtcat 254

                                                                
Query: 181 taaagggaggctgggatgccacacatgcctgagataggcccctttacacggtg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaagggaggctgggatgccacacatgcctgagataggcccctttacacggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)