BAC Information

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BAC

Clone NameMSMg01-134F02
Chromosome5 (Build37)
Map Location 33,575,943 - 33,576,276
singlet/doubletsinglet
Overlap genenone
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2
Downstream geneCtbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134F02.T7 (MSMg01no134_f02.b1)MSMg01-134F02.TJ (MSMg01no134_f02.g1)
ACCAG341062AG341063
length1,1361,133
length of high quality
(start - end)
334 (497 - 830)600 (196 - 795)
definitionCHROMAT_FILE: MSMg01no134_f02.b1 PHD_FILE: MSMg01no134_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:36 2005CHROMAT_FILE: MSMg01no134_f02.g1 PHD_FILE: MSMg01no134_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGCGCCAGTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAA
TTCACATTCCAGTCTGACCCAAGAGAAGCAAGTGTTCTTAATCACAGAGG
TATCTCCCCAGCACAAATTCTCTTGAAAAGAATTATTTTAGTTTATGTAT
GTGTATGTGTGTGTGCCCATGGAAACCAAAGCTTCTTGTTGGATTTCCTA
AAAGCAGGAGTTACAGGAAGCTGGGAGCCACACAAGTGTGGGTTTTGGGA
ACTGATCTCAGGTCCTCTGGAAGAACAACTGTTCCTTCCTAACCCATGAG
CCATTTCTCCAGCCCTGTCACTTGGCACTTCTCAGACATAGTTACCAGTG
ACAGTGGACAGTGGTTGTACATGTTCATAGGCCACTGTAAGGGAGCATAT
TTGGGGAAAGGAACAGAGACGCTCATGGATCTTCCTCTCACTTGACTATT
TTTTTTCACCCCTGAAATCCCAGGTGACACTTTGAAAAGAAGAGACTGTT
CCTTCTCCGGGAGGACATCACATCCTCCTAAGGACATGCCGGACCTTCTT
TCGTTTTCCTGTCTGTGTGACCTGCATTGTTTATGGTTCTTCTCATGCTG
AGTCTAGATCTTTCTTGTCTTTCTTCTCTAGAGAAGATCATGTTTAACTG
TCCTGAAAGAGTGGCTGCCTCTCACATGGGGAAACATTGCTGTCCCTAGC
AGTCAGGTGATGCCCTGACCACAACACTAACACAGAGGTCAGGGGGTACT
TCTGTGACCTTGCTTTAGACAGCATGCTCTGGCTGCTTCCTCTCTTTGGT
GCCCATCACCACCACCATCAAGAGCTGCCCTTAGGCCTTTTTTACAACCT
TGGTCATCATCCTGCCTGAGGACCACACCTTGGGTGTCTTGAGAAAGGAA
GCTGAATAGCTGTGGACCAAACAACCCGGAATGGGGAAGAAGTTAGTCTT
GCCTTTCTGGGCCCTGGCCTGTTTTGAATTGCTTTTATCAACATTCTTAA
ATTTTTTGAAGTTTCTTCCCACCCATCATTGTGGCCTTTAGTGAACATTG
GTTTAAAATTTTTCTTCCCAAAGAGCTTTTTCCCCAAAATGGGGATATAT
TTTCTGAAGTGAAAATATTATCTTGCGAAAATACCC
CGTATTTTTTNNNAACGATGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAAATCCCCTGAAACCCATT
TTTAATGATATTTTTCTTTTAAAAGTCCCGATGTCCAGCTTTATGAGTTC
TTTATATATTTTGGATATTAACTCTCTGTAGGATACATTTTTGGTAAAAA
TCTTTCCCTATTCTGTAGCCTGCCACTTCATCCAAATGATGGTGTCCTTT
GCTATACGGAAGCTTTACAGCTTCATAAGGTTTCATTTATTAATTGGTGT
TCTTAGTACCTGTGCTAACAGTGTTCTGTTGAGAAAGTCTTTTCCCATGC
AGTGAGCCCAGAACTATTCTCCACTTTCTCTTCAGTCAGACTCAGTGTAT
CTTTTCTTATGTGAGGTCTTTGATCCATTTGGAGTTGAGTTTTATGAAGG
ATGATAAGAATGGATCTATTTATATTCTTCTATATGCAGACATCCACTTT
GAACAGTACCATTTATTGAAGATGCTATCTTTTTCCTAGAATGTATTTCT
GGCTTCCTTACCAAAATTCAGGTGTCCATAGGTCTGTGGACCCTTTTCTG
GGTCTTTGATTGTATTTAATTAACCAATATGTCTGTTTTGTGCTAATACA
ATGCTTCATTACTATTGCTTGTTAGTATAATTTGTGATTGGGGATGGTGG
TACCTCTAGCAGTTCTTTTATCACTCAGGAGTGTTTTTAGTTATTCTGAT
TTTCTTGTGTTTCAATATAAGTTGAATGTTGTCCTTTTAAGTTCTGTGAA
GAATAGTGCTGGAATTTGATGAGGATTGCATTGAATCTATAGATTACTTT
TGGCAGGATAAAGATTTTTCCTTTATTAACCTTCTGATCCCTGAACATGA
GAGAGCTTTTCGTCTTCTGTTATTTTCTCTCAAGCCTTAAAATTTTTATC
ATAAAAGTCCCTTCCCTTGTTTGGGTAAAAGTTACCCCCCGAATATTTTT
CCTTTTTTTTTCTCTCTCTGTGTAAAGGGGTTTATTTGAAACCCCTTTTT
TTTATGAAAAAGGGGTTTTTTTTATACCCCTTTTTTTTTTTTTTGCATAC
AAAAGATATCATAGTATTTTCTTTGGTTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_f02.b1 MSMg01no134_f02.b1 CHROMAT_FILE:
MSMg01no134_f02.b1 PHD_FILE: MSMg01no134_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:36 2005
         (334 letters)



>mm_chr5_33575743_33576476
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttccttctccgggaggacatcacatcctcctaaggacatgccggaccttctttcgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgttccttctccgggaggacatcacatcctcctaaggacatgccggaccttctttcgttt 475

                                                                       
Query: 61  tcctgtctgtgtgacctgcattgtttatggttcttctcatgctgagtctagatctttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcctgtctgtgtgacctgcattgtttatggttcttctcatgctgagtctagatctttctt 415

                                                                       
Query: 121 gtctttcttctctagagaagatcatgtttaactgtcctgaaagagtggctgcctctcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtctttcttctctagagaagatcatgtttaactgtcctgaaagagtggctgcctctcaca 355

                                                                       
Query: 181 tggggaaacattgctgtccctagcagtcaggtgatgccctgaccacaacactaacacaga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tggtgaaacattgctgtccctagcagtcaggtgatgccctgaccacaacactaacacaga 295

                                                                       
Query: 241 ggtcagggggtacttctgtgaccttgctttagacagcatgctctggctgcttcctctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggtcagggggtacttctgtgaccttgctttagacagcatgctctggctgcttcctctctt 235

                                             
Query: 301 tggtgcccatcaccaccaccatcaagagctgccc 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tggtgcccatcaccaccaccatcaagagctgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)