Query= MSMg01no135_g05.b1 MSMg01no135_g05.b1 CHROMAT_FILE:
MSMg01no135_g05.b1 PHD_FILE: MSMg01no135_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:30 2005
(629 letters)
>mm_chr5_44261725_44262753
Length = 1029
Score = 754 bits (390), Expect = 0.0
Identities = 607/780 (77%), Gaps = 156/780 (20%)
Strand = Plus / Plus
Query: 6 ggaattcagttctttccctccactctgtagcttctgggaatcaaattcagataattagag 65
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ggaattcagttctttgcttccactctgtagcttctgggaatcaaattcagataattagag 109
Query: 66 gtttggaagcaagcatccctacctgctagtctgcatcatttgcctaacatattactattg 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 110 gtttggaagcaagcatccctacctgctagtctgtatcatttgcctaacatattactattg 169
Query: 126 tgatgagcatcttttcagacatctcacacacgcacacacacacacacacacacacacaca 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 170 tgatgagcatcttttcagacatctcacacacacacacacacacacacacacacacacaca 229
Query: 186 cacacacacacac----------------------------------------------- 198
|||||||||||||
Sbjct: 230 cacacacacacactttatatgaatagattagtggcaggtacatctcatgtgtcaggcact 289
Query: 199 -------------------------------------------------aca-------- 201
|||
Sbjct: 290 tatgtcaggagctgaggtgcagctcagtgatagagctctggcctggtttacaaagtgccc 349
Query: 202 ------cac-------------------------------------caa----gacagaa 214
||| ||| |||||||
Sbjct: 350 tgggttcaccctcagcatcgcagtagaggaatgagtggaacagaatcaaccaggacagaa 409
Query: 215 ggcaacgatacatagacggttgctattgatatctccattttatagataagaaaagggagt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggcaacgatacatagacggttgctattgatatctccattttatagataagaaaagggagt 469
Query: 275 caaaagctgaaccctgttgaaccctgaagccagatcattggagctggaatcttggctctg 334
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 caaaagctgaaccctgttgagccctgaagccagatcattggagctggaatcttggctctg 529
Query: 335 ttgcaacctcagactctgtcctcagtgtat-----ctgtggcgcgttcccaccttgtaaa 389
|||| ||||||||| | | ||||||||||| |||||| | ||||||||||||||||
Sbjct: 530 ttgcgacctcagaccccgccctcagtgtatctgcgctgtggtgtgttcccaccttgtaaa 589
Query: 390 atgggaacgttaatggcagcactcggcagctagagtaaacgaagaggactaagatgaata 449
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 590 atgggaacgttaatggcagcactcggcatctagagtaaacgaagaggactaagatgaata 649
Query: 450 atcttgtcatggtaaatgctcaaaatgttactgctgtgtaaatggagtgttgcagatacc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atcttgtcatggtaaatgctcaaaatgttactgctgtgtaaatggagtgttgcagatacc 709
Query: 510 tctccacaatagcaaatataagataagtacaggcgttcatgcattagaacattgttccat 569
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 710 tctccacaatagcaaatataaaataagtacaggcgttcatgcattagaacattgttgtat 769
Query: 570 aattcagtcctccagtgctgcaagttacattgtttcgaatcttgttcacctaacacttgg 629
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 770 aattcagtcctccagtgctgaaagttacatcgtttcgaatcttgttcacctaacacttgg 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_g05.g1 MSMg01no135_g05.g1 CHROMAT_FILE:
MSMg01no135_g05.g1 PHD_FILE: MSMg01no135_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:31 2005
(311 letters)
>mm_chr5_44416452_44417162
Length = 711
Score = 534 bits (276), Expect = e-156
Identities = 303/314 (96%), Gaps = 4/314 (1%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggcctcgaacttagaaatccacctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 actctgtagaccaggctggcctcgaacttagaaatccacctgcctctgcctcccaagtgc 493
Query: 61 tgggattaaaggcgcgagccaccgctgcccggcttctaaaagtattcttaaattgaatgg 120
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 492 tgggattaaaggcgtgagccaccactgccctgcttctaaaagtattcttaaattgaatgg 433
Query: 121 tctagggcctgtcaggatccaagaaagtggtccacacgagaatcctatttgctcacacac 180
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 432 cctagggcctgtcaggatccaagaaagtgttccacacgagaagcctatttgctcacacac 373
Query: 181 gtagttttaaagcattcctcttcaggactggagaaatggtctagaggtcgaggccttgca 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtagttttaaagcattcttcttcaggactggagaaatggtctagaggtcgaggccttgca 313
Query: 241 aggctctggatacaagcc----agggagggagggagggacgtagggacagagggatggag 296
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggctctggatacaagccagggagggagggagggagggacgtagggacagagggatggag 253
Query: 297 gaatggagggaagg 310
||||||||||||||
Sbjct: 252 gaatggagggaagg 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
