Query= MSMg01no135_m15.b1 MSMg01no135_m15.b1 CHROMAT_FILE:
MSMg01no135_m15.b1 PHD_FILE: MSMg01no135_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:59 2005
(659 letters)
>mm_chr5_135948622_135949685
Length = 1064
Score = 1087 bits (562), Expect = 0.0
Identities = 599/614 (97%), Gaps = 5/614 (0%)
Strand = Plus / Minus
Query: 51 gatctctccagcttcccccttctccccccccacccctgtataggccagtcttatggagac 110
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct: 1064 gatctctccagcttcccccttatcccccccaacccctttataggccagtcttatggagac 1005
Query: 111 gttttctcaattgtcctatcatctcagatgactctagattgtgtcaaataccatcaagga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gttttctcaattgtcctatcatctcagatgactctagattgtgtcaaataccatcaagga 945
Query: 171 cactagtcaggtgctctcactgagccacaccgccagccccttcctggggtattctaggaa 230
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 944 cactagtcaggtgctctcactgagccacactgccagccccttcctggggtattctaggaa 885
Query: 231 agtgatccatgttctcagccaccctggcattcttctaacttccattatgtggcgcagcct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 agtgatccatgttctcagccaccctggcattcttctaacttccattatgtggcgcagcct 825
Query: 291 acctgttcatttctccatttctaacaaagaaaccccgagacaggaatgtaggtcagctgg 350
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 824 acctgttcatttctccatttctaacaaagaaaccctgagacaggaatgtaggtcagctgg 765
Query: 351 tagaatacttgcctgggttgctcagttatagttctgcgtgcatacctgataggttgcttt 410
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 764 tagaatacttgcctgggttgctcaattatagttctgcgtgcatacctgataggttgcttt 705
Query: 411 tattgaacatacctgaaaacaagctcccatgtcctcaagcaaacttttcccaccattctc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tattgaacatacctgaaaacaagctcccatgtcctcaagcaaacttttcccaccattctc 645
Query: 471 tctgtcgcattcatttagtttgggaatgggtttcgctatgttgcgtagactgaccccacc 530
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 644 tctgtcgcattcatttagtttgggaatgggtttcgctatgttgcatagactgaccccacc 585
Query: 531 ctctctgtattgctcatgctggcacttaatttgagattcttccaccctgggcccttgagc 590
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 ctctctgtatagctcatgctggcacttaatttgagattcttccgccctgggcccttgagc 525
Query: 591 act-----tacacacctgtgtcaccacacccatctctctgtcttgttaatagtaatttgg 645
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 524 actggaattacacacctgtgtcaccacatccatctctctgtcttgttaatagtaatttgg 465
Query: 646 ttcctctctttcct 659
||||||||||||||
Sbjct: 464 ttcctctctttcct 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1064
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1054
Effective search space: 684046
Effective search space used: 684046
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_m15.g1 MSMg01no135_m15.g1 CHROMAT_FILE:
MSMg01no135_m15.g1 PHD_FILE: MSMg01no135_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:59 2005
(628 letters)
>mm_chr5_135850565_135851592
Length = 1028
Score = 1207 bits (624), Expect = 0.0
Identities = 627/628 (99%)
Strand = Plus / Plus
Query: 1 tcagttcactctgcctctgctcttctccctaggaagatctttgctttcgaccaggacgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagttcactctgcctctgctcttctccctaggaagatctttgctttcgaccaggacgct 260
Query: 61 aagcggctggcagccatggcgacgttgctggctcgggctggggtctcttgctgcgagtta 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aagcggctggcagccatggcgacgttggtggctcgggctggggtctcttgctgcgagtta 320
Query: 121 gcagagaaggacttcctgacagtctctccctctgaccagcgttacagccaggtccagtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagagaaggacttcctgacagtctctccctctgaccagcgttacagccaggtccagtac 380
Query: 181 atcttgctggatccttcttgtagtggctctggtgagaaggggacagtgtggctctggtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttgctggatccttcttgtagtggctctggtgagaaggggacagtgtggctctggtcg 440
Query: 241 taggcctgtagcagcttggatactggagatgcccagttagtcttggtgttgctttggact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggcctgtagcagcttggatactggagatgcccagttagtcttggtgttgctttggact 500
Query: 301 tgtaactacaaatgctctcatctttaaaatgggggtttgggtgtggaaatggcttcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaactacaaatgctctcatctttaaaatgggggtttgggtgtggaaatggcttcataa 560
Query: 361 ttgcagctctttttccacaggcatgctgagccggcagctggaggaacatggggaaggcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgcagctctttttccacaggcatgctgagccggcagctggaggaacatggggaaggcac 620
Query: 421 acctagcaaggagcgcttgcaggccttggccgggttccagcagcgggctctgtgccatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctagcaaggagcgcttgcaggccttggccgggttccagcagcgggctctgtgccatgc 680
Query: 481 acttaggttcccctctctgcagcgcctagtctactccacgtgttccctttgccaagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttaggttcccctctctgcagcgcctagtctactccacgtgttccctttgccaagaaga 740
Query: 541 gaatgaagacgtggtccaggaggctctacagcacaactcggggacattcaggtagtggtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaatgaagacgtggtccaggaggctctacagcacaactcggggacattcaggtagtggtc 800
Query: 601 cccaggtctgaggtcacaagttgcttct 628
||||||||||||||||||||||||||||
Sbjct: 801 cccaggtctgaggtcacaagttgcttct 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
