Query= MSMg01no136_a05.b1 MSMg01no136_a05.b1 CHROMAT_FILE:
MSMg01no136_a05.b1 PHD_FILE: MSMg01no136_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:16 2005
(511 letters)
>mm_chr5_114265616_114266525
Length = 910
Score = 774 bits (400), Expect = 0.0
Identities = 482/512 (94%), Gaps = 9/512 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttcccaaggccaggtgtcacattttgagaatcagttgtttagcaaatacattg 63
|||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 204 ggaa-tcttcccaaggccaggtgtcacgttttgagaatcagttgtttagcgaatacattg 262
Query: 64 ccagaaaagccaaaagcatccacactcaaaaccccaagct--gccacctcccgacacctt 121
||||||||||||||||| ||||||||||||||||| |||| | ||||| |||||||
Sbjct: 263 ccagaaaagccaaaagcttccacactcaaaaccccgagctggg---cctccggacacctc 319
Query: 122 ctcccagaagcaggtggctggcgccccctggtggctgttcgcctcatccagcgggtgacc 181
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 320 ctcccagaagcaggtggctggcgccccctggtggctgttcacctcacccagcgggtgacc 379
Query: 182 catccgagaaagaaaacgttcttacacagcatccccaggaagaggacgagggccctgggg 241
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 380 catccgagaaagaaaacgttcttatacagcatccccaggaaggggacgaggaccctgggg 439
Query: 242 aattgttatggtgccctcaagtcctgtagcttccaggtttgtgaatcctacccgctactg 301
|||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct: 440 aattgttatggtgccctcaaatcctgtagcttccaggtctgtgaatcctccccgctactt 499
Query: 302 tttctgatccaaagggaggataaacccaggatctgctcagtccgccagctggcggcctct 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttttgatccaaagggaggataaacccaggatctgctcagtccgccagctggcggcctct 559
Query: 362 gcaggtccagagcacagcagcagacattgccacctccagacgctgg--catctccctacc 419
|||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 560 gcaggtccagaggaaagcagcagacattgccacctccagatactgggacatctccctac- 618
Query: 420 actccctgctctgtccctgagggccccatggcctgccacgttccttcctgtctttctctg 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 actccctgctctgtccctgagggccccatcgcctgccacgttccttcctgtctttctctg 678
Query: 480 tggctctcttccttctccatccctctctccca 511
||||||||||||||||||||||||||||||||
Sbjct: 679 tggctctcttccttctccatccctctctccca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space: 450900
Effective search space used: 450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_a05.g1 MSMg01no136_a05.g1 CHROMAT_FILE:
MSMg01no136_a05.g1 PHD_FILE: MSMg01no136_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:16 2005
(435 letters)
>mm_chr5_114405219_114406051
Length = 833
Score = 806 bits (417), Expect = 0.0
Identities = 430/435 (98%), Gaps = 2/435 (0%)
Strand = Plus / Minus
Query: 1 atcgataacgagatgctgctcatcctgggccagatggacaagccctccctcatctttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atcgataacgagatgctgctcatcctgggccagatggacaagccctccctcatctttgac 521
Query: 61 catctttatcttgtaagaagcctagctctagtgggaccgggtttgggggcctaattttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 catctttatcttgtaagaagcctagctctagtgggaccgggtttgggggcctaattttgg 461
Query: 121 gacttggattggggaccatgctcagagacacgtacaacccagatgaggctgtgccttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gacttggattggggaccatgctcagagacacgtacaacccagatgaggctgtgccttagc 401
Query: 181 acctaccagaaacaaaggtagcttacttgttcctctctgagcccactgaaggatgcactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acctaccagaaacaaaggtagcttacttgttcctctctgagcccactgaaggatgcactc 341
Query: 241 ttcccctccccccccacgtctcctgtgcttggtgtctccagaccgtaaatatccgtagaa 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttcccct--ccccccacgtctcctgtgcttggtgtctccagaccgtaaatatccgtagaa 283
Query: 301 ggcaactggtcaatcttcagaggcaagcatgttgctaaaattacctaggagatcatgaag 360
||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 282 ggcaactggccaatcttcagaggcaagcaggttgctaaaattagctaggagatcatgaag 223
Query: 361 ttgaatggaaagacccagccaaagcagggcagtggtggcgaatgcctttaatccccatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttgaatggaaagacccagccaaagcagggcagtggtggcgaatgcctttaatccccatac 163
Query: 421 ttggaaggcagaggc 435
|||||||||||||||
Sbjct: 162 ttggaaggcagaggc 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 833
Length adjustment: 9
Effective length of query: 426
Effective length of database: 824
Effective search space: 351024
Effective search space used: 351024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
