Query= MSMg01no137_j19.b1 MSMg01no137_j19.b1 CHROMAT_FILE:
MSMg01no137_j19.b1 PHD_FILE: MSMg01no137_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:21 2005
(678 letters)
>mm_chr5_85616894_85617971
Length = 1078
Score = 1176 bits (608), Expect = 0.0
Identities = 614/616 (99%)
Strand = Plus / Plus
Query: 63 tgcccgagttggataattaaatatattacaatattttgatagtcaaaaacccaagtgggt 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 tgcccgagttggataattaaatatattacaatattatgatagtcaaaaacccaagtgggt 322
Query: 123 atgaacagtgtttctacaaacctttgaatggtaattaaaatgaatgagtcgccatacatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaacagtgtttctacaaacctttgaatggtaattaaaatgaatgagtcgccatacatt 382
Query: 183 attcttacttcagggttacagggatctttcctttgtcatagtaactgcatagcaggaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attcttacttcagggttacagggatctttcctttgtcatagtaactgcatagcaggaaac 442
Query: 243 agccaacttcctaactggattttcttttcccctttgtgtgtgctatttattcactaacag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agccaacttcctaactggattttcttttcccctttgtgtgtgctatttattcactaacag 502
Query: 303 ttaatgtgtcaaatcaaattgcttaggattaggttgcaaatatgtctttcgacatttttt 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaatgtgtcaaatcaaattgcttaggattaggttgcaaatatgtctttcgacatttttt 562
Query: 363 tttctaagaagaataactgtgttttaaaatgtgtttaaggattttacatattctcataaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttctaagaagaataactgtgttttaaaatgtgtttaaggattttacatattctcataaa 622
Query: 423 aatgtggtttaaacaagaaattgatatgtattttctaattaaacagtttagactaggtaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatgtggtttaaacaagaaattgatatgtattttctaattaaacagtttagactaggtaa 682
Query: 483 attgtctaaaaccaaaaaacacacagcagacaataataacaaaaccatctcattgtgaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attgtctaaaaccaaaaaacacacagcagacaataataacaaaaccatctcattgtgaaa 742
Query: 543 gatgcagtgtgtcatagtgtatcccacaatataccctttagtctacacaacttgcaaata 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gatgcagtgtgtcatagtgtatcccacaatataccctttagtctacacaacttgcaaata 802
Query: 603 tttgtttcaatgagttttagccaggtttgaggtctctggcttctgctacactatcaatac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttgtttcaatgagttttagccaggtttgaggtctctggcttctgctacactatcaatac 862
Query: 663 tggatactcatctgga 678
||||||||||||||||
Sbjct: 863 tggatactcatctgga 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_j19.g1 MSMg01no137_j19.g1 CHROMAT_FILE:
MSMg01no137_j19.g1 PHD_FILE: MSMg01no137_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:22 2005
(664 letters)
>mm_chr5_85765178_85766241
Length = 1064
Score = 1011 bits (523), Expect = 0.0
Identities = 588/617 (95%), Gaps = 12/617 (1%)
Strand = Plus / Minus
Query: 1 agggaacaccccagaagaggaagaggaaggatagtaaaagccagagaggctgaggacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agggaacaccccagaagaggaagaggaaggatagtaaaagccagagaggctgaggacaac 558
Query: 61 tggagaacatggcccacagaattaactaaacaggactcataggttctcacggacactgaa 120
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 557 tggagaacatggcccacagaattaactaaacagggctcataggtcctcacagacactgaa 498
Query: 121 gagtcaataatggagagcagaccacaaggctgttgggtttgctagggtacccagcctgaa 180
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 gagtcaataatggagggcagaccacaaggctgttgggtttgctagtgtacccagcctgaa 438
Query: 181 aaggtttggtgcttagggatgtcatttctttttcctgggtggcagcaggcctccagggat 240
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 437 aaggtttggtgcttagggatgtcattcctttttccagggtggcagcaggcctccagggat 378
Query: 241 gtaggccgacttatagcccaggaaattgagtacagagggggcagaatggtgcttgtcact 300
||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct: 377 gtaggccaacttatagcccaggaaattgattacagagggggcagaatggagcttgccact 318
Query: 301 gctgggcttgcccaaaggagcagacaagcagcaaattagggtaagggtctcatctagttg 360
|||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct: 317 gctgggcttgcccaaaggagcagacatgcagtgaattagggtaagggtctcatctggttg 258
Query: 361 tccctgatgggtacagacctctaggattatgtttagaggtatgggtcaggagatgga--- 417
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 257 tccctgatgggtacagacctctaggattatgcttagaggtatgggtcaggagatggagtg 198
Query: 418 ---------cagggcagacctcatggctactgggcttgccaggcatatatatatctccaa 468
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cagaggggacagggcagacctcatggctactgggcttgccaggcatatatatatctccaa 138
Query: 469 gcacagtaatgaatttttaatattttcctgtagattattcaattctcattaatttatttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gcacagtaatgaatttttaatattttcctgtagattattcaattctcattaatttatttt 78
Query: 529 tgatgataaacaatattcttttgaatacacaaattaggcatacagcatcattttggtgaa 588
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 77 tgatgataaacaatattcttttgaatatacaaattaggcatacagcatcattttggtgaa 18
Query: 589 tattaaagttataccaa 605
|||||||||||||||||
Sbjct: 17 tattaaagttataccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
