BAC Information

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BAC

Clone NameMSMg01-137M01
Chromosome5 (Build37)
Map Location 100,654,533 - 100,654,973
singlet/doubletsinglet
Overlap geneLOC666417
Upstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
Downstream geneSec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137M01.T7 (MSMg01no137_m01.b1)MSMg01-137M01.TJ (MSMg01no137_m01.g1)
ACCAG343597AG343598
length738726
length of high quality
(start - end)
441 (48 - 488)254 (64 - 317)
definitionCHROMAT_FILE: MSMg01no137_m01.b1 PHD_FILE: MSMg01no137_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:33 2005CHROMAT_FILE: MSMg01no137_m01.g1 PHD_FILE: MSMg01no137_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGGCGCGG
AATTCCTTCTTCGTAACTTCCATTCTCTGATACATTGTTGCCCTCAATGG
CATCTGGCTGGTCAACAGCACTGCCCACGTATGGGAAAGCAGACCTATGA
CAAGCAAATCAGCCCTCAGAAGAACCCACTAGTCGCTCTGGGAGCCATTA
GTGAGTGAGGCATTGAGAGCCAGAAGAGGTATGGCGGTCCAGATGTTATT
GACTTAGTGGGAGGGAAGGGTTTATGGCTCTAAAAAAGAGAGTGGAGCAG
TGCAGAGACACTGAACATTGGTCTTAGCATCCTAGCTCTGAGACAAGTCG
GGCGAGTTCTCTGCCTTACAATGCTCTTATCTGTCAAACAGGAAAGAGCA
ATGCCTCCCTTGTAGAGCATACAAACTGCACAGTGCAGCTCCTGGAGCAC
GGAAGATGATCAATAAATGGGATAATAGTTACTTTCATCATGAAAAATTT
CCTACAGGAAGAAAAGCAGCAATTGCTTTGTTTCTCAAACAGGCTTGTCT
ACTCTAGACTTGGCTATCCCATCATATGTCAGGGGGCAAAAAAGGCCTTC
AATCAAGCAGTGGCAAGAAAAGGAGAGTCTTGGACCCCAAGTAGCTTATA
GTAATGTTAGCCTGTGCGGACTCCAGGTTAGGGCTCTCCTGGGGCCCTCC
ATTTGCTCTCTGGGATCAGCCCTCACTCTTCTGGGTTA
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTGGAATTCTCTGATGCATGCTATCCCGTGATGGTGCCTGT
GATATTTTCTTAGTTTGGTCACTTGAGATGGGAAGACCTGCCCTGAATGT
GGCCAGCACCATTTCAAAGATAGGTTTTCAGCACTCTGGAAACGGACACA
GGTGAATCTCTGTGAGTTCGAGGTCAGCGTGTCCTACATAGTAAGTTCCA
GGGCAGTCAGATCTACATAGTGAGACTGTCCAGAAAGAGAGATGGGAGTG
GAGGGGGAGAGAGATATTTCTAACTTAGAAGAGGTTAAGTATACACAACC
GCAAACAATTTACCTAAAGGGATCTGGGTAAAACAGTTATCCCAGAATGG
CCTAATATTGTTCTTACTTAAAATTCCTATCAGGGGCTGAAGAGATGGCT
CAGTGGTTAAGAGCACTGACTACTCTTCCAAAAGCCCTGAGATCAATTCT
CAGCAACCACTTGGTGGCTCACACCCAGCTGAATAGGGACCTGATGCCCT
CTTCTGGTGTGTCTGAAAGTCGTTATAGTATACTCCAGATCCTTTTCATA
ACTAATATATTAATAATCCTTTTAAAATATCCTAACAAAACCAATTAACC
CTTTTTTAAACCCATAATAGCATATTCTTCCAACAAAAACAGGCCTTCAA
AAATACCGAACTCCTTCCCCTCTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_m01.b1 MSMg01no137_m01.b1 CHROMAT_FILE:
MSMg01no137_m01.b1 PHD_FILE: MSMg01no137_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:33 2005
         (441 letters)



>mm_chr5_100654332_100655173
          Length = 842

 Score =  791 bits (409), Expect = 0.0
 Identities = 433/441 (98%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattccttcttcgtaacttccattctctgatacattgttgccctcaatggcatctggc 61
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggaattccttctttgtcacttccattctctgatacattgttgccctcaatggcatctggc 583

                                                                       
Query: 62  tggtcaacagcactgcccacgtatgggaaagcagacctatgacaagcaaatcagccctca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggtcaacagcactgcccacgtatgggaaagcagacctatgacaagcaaatcagccctca 523

                                                                       
Query: 122 gaagaacccactagtcgctctgggagccattagtgagtgaggcattgagagccagaagag 181
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 522 gaagaacccactcgtcgctctgggagccattggtgagtgaggcattgagagccagaagag 463

                                                                       
Query: 182 gtatggcggtccagatgttattgacttagtgggagggaagggtttatggctctaaaaaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtatggcggtccagatgttattgacttagtgggagggaagggtttatggctctaaaaaag 403

                                                                       
Query: 242 agagtggagcagtgcagagacactgaacattggtcttagcatcctagctctgagacaagt 301
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 402 agagtggagcagtgcagagacactgaacattggccttagcatcctagctctcagacaagt 343

                                                                       
Query: 302 cgggcgagttctctgccttacaatgctcttatctgtcaaacag-gaaagagcaatgcctc 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 342 cgggcgagttctctgccttacaatgctcttatctgtcaaacagtcaaagagcaatgcctc 283

                                                                       
Query: 361 ccttgtagagcatacaaactgcacagtgcagctcctggagcacggaagatgatcaataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccttgtagagcatacaaactgcacagtgcagctcctggagcacggaagatgatcaataaa 223

                                
Query: 421 tgggataatagttactttcat 441
           |||||||||||||||||||||
Sbjct: 222 tgggataatagttactttcat 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space:   359856
Effective search space used:   359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)