BAC Information

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BAC

Clone NameMSMg01-138E07
Chromosome5 (Build37)
Map Location 24,052,406 - 24,052,938
singlet/doubletsinglet
Overlap gene4931409K22Rik
Upstream geneSrpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10
Downstream geneAbcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138E07.T7 (MSMg01no138_e07.b1)MSMg01-138E07.TJ (MSMg01no138_e07.g1)
ACCAG343977AG343978
length702704
length of high quality
(start - end)
412 (79 - 490)535 (76 - 610)
definitionCHROMAT_FILE: MSMg01no138_e07.b1 PHD_FILE: MSMg01no138_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:15 2005CHROMAT_FILE: MSMg01no138_e07.g1 PHD_FILE: MSMg01no138_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGAACCGCGG
AATTCTTTTGTTTGCCAAAAGAAATGTGTGCTTGCTGTCCCATAAGAATT
AAGGGGCTGGGGTCATGGGATGCTGAGTCACAGGATAATCAAAGGGACAC
CTGGATTAAATGACTGGATTGATATATAAAATAAAATACTGGATTTATGA
TCTGCAAGAGATGCGCTATCCAGAGAATTTTTAGACTAGCAAAGGAGAAC
TGCTTGAAGAAGTATCTTGAGCAGGAAATAGAGAGCTGCCTGGAGATCTC
CAGAGAAAGCAGAACAGAGAGCTTGTACCCATGATTTGACTTAAAATCCT
TTGTTCCATAGCTCCCAGACACACCTTCTCCCAGAACTGCTCCGAGGCTG
GTCCTTAGCATATTTAAGCATAGCACAATTTGGAAAAACAGCTTTCTGGT
GATAGTTAACTCAATCCTGTGTGCACGGTTTTTTGTTTGTTTGTTGCTGT
TGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTC
ACTTTGTAGACCAGGCTGGCCTTTGACTCAGAAATCCGCCTGCCTCTGTC
TCCCGGGTGCTGAGATTAAAGGCATGCGCCACCACGCCCTGTGCTGATGT
GTATTGCTGCGCCTCATTCCCAAGCCCCTTAATACCACCCAGGTATTGTA
TT
NTTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAGCCGAAGAACCCCATACAG
CGCCATGTTCTGCCGGATATCAAACAGGGACGGCATGGGCATCTTGTTTG
CCAAAGTCAGAGTGGACCCGAGATAGAGGCAATCACCTGTGGGGACCGGG
AGGGGACAACTGGTGAGTGACCCTCCTGGGAGTGTCTGTGGGAGAGATCT
GTTGGAAAGGAGGCCTCAGGAAACAGGGCAGGTGTGGAAGGGCAAGGGTG
GCCACACCTAGATTCAGGGACATGTGAGGGGCTCACCAATGTAGTCACTG
AGTGTCACTAGTGCAGACTTCTTTATAAGGCCAATAATAACAAGCTCTTC
AAACAGTGAGTCCACAGACCTGTGGGAGAGTGGTGTAGAAGGACCCCAGG
GATGTTAGTGAGAGGAGACAAGGGACAAGGAAGTGGAGATGGGGCTGTGA
GCGTGAGAAGAGGTGACAAGGGGTGCCCTGGTAATGTTTTGGGATCAGAA
ATGTCTCTGGACAGCCAGAATCAGAAAATGAGGTCCTGTCCACTGTGTCA
GGGCATAGATACTCCACAGTGAGTGCACTGTGGAATGTGACAGATGCCAA
GGCCCCCTGCAACTTTGCCCATTAGACTTTTCCCTTCCACCACTTGAAGT
CTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_e07.g1 MSMg01no138_e07.g1 CHROMAT_FILE:
MSMg01no138_e07.g1 PHD_FILE: MSMg01no138_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:15 2005
         (535 letters)



>mm_chr5_24052204_24053138
          Length = 935

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccagccgaagaaccccatacagcgccatgttctgccggatatcaaacagggacggcatg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cccagccgaagaaccccatacagcgccatgttctgccggatatcaaacagggacggcatg 262

                                                                       
Query: 63  ggcatcttgtttgccaaagtcagagtggacccgagatagaggcaatcacctgtggggacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggcatcttgtttgccaaagtcagagtggacccgagatagaggcaatcacctgtggggacc 322

                                                                       
Query: 123 gggaggggacaactggtgagtgaccctcctgggagtgtctgtgggagagatctgttggaa 182
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 gggaggggacaactggtgagtgaccctcctgggagtgtctgtgagagagatctgttggaa 382

                                                                       
Query: 183 aggaggcctcaggaaacagggcaggtgtggaagggcaagggtggccacacctagattcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggaggcctcaggaaacagggcaggtgtggaagggcaagggtggccacacctagattcag 442

                                                                       
Query: 243 ggacatgtgaggggctcaccaatgtagtcactgagtgtcactagtgcagacttctttata 302
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggacatgggaggggctcaccaatgtagtcactgagtgtcactagtgcagacttctttata 502

                                                                       
Query: 303 aggccaataataacaagctcttcaaacagtgagtccacagacctgtgggagagtggtgta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggccaataataacaagctcttcaaacagtgagtccacagacctgtgggagagtggtgta 562

                                                                       
Query: 363 gaaggaccccagggatgttagtgagaggagacaagggacaaggaagtggagatggggctg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaaggaccccagggatgttagtgagaggagacaagggacaaggaagtggagatggggctg 622

                                                                       
Query: 423 tgagcgtgagaagaggtgacaaggggtgccctggtaatgttttgggatcagaaatgtctc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgagcgtgagaagaggtgacaaggggtgccctggtaatgttttgggatcagaaatgtctc 682

                                                                
Query: 483 tggacagccagaatcagaaaatgaggtcctgtccactgtgtcagggcatagat 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggacagccagaatcagaaaatgaggtcctgtccactgtgtcagggcatagat 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)