BAC Information

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BAC

Clone NameMSMg01-139A14
Chromosome5 (Build37)
Map Location 91,704,865 - 91,879,863
singlet/doubletdoublet
Overlap geneBtc
Upstream geneAnkrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139A14.T7 (MSMg01no139_a14.b1)MSMg01-139A14.TJ (MSMg01no139_a14.g1)
ACCAG344543AG344544
length708705
length of high quality
(start - end)		663 (46 - 708)623 (78 - 700)
definitionCHROMAT_FILE: MSMg01no139_a14.b1 PHD_FILE: MSMg01no139_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:17 2005CHROMAT_FILE: MSMg01no139_a14.g1 PHD_FILE: MSMg01no139_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,704,865 - 91,705,516)(91,879,265 - 91,879,863)
sequence
NTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXCTTTCGAAAGAGATCCGC
GGAATTCAAAAAGCACATGCTCCCCTGATCTTAGATAGAAATAGCATGAT
TCTCCAAGGGAGAAACAACATATCATAGGGCACAAAAGTATTTAAATATC
TAGACAAGCAAATAGTGGACCAGTTGTCAAAACCTGATGTCTGTGACTTG
ACGGATATATCATTGTCATAAAAGGAAAATAAATCCAAAGTGTTATCATA
GGGAAATGGCTAATCAAGATTCTGGATCGGAAACTGAAGATGCTGTAGAA
ATTCTTTCATTCAAAAACTATAGCCTTAATTACGTTGAAAAGGAAAAAAA
TTTCTATCTGTTCTTCAATTAGCTCTCAAGGCCGCACCCTGGAGTCTGGA
ATAGAGGCACTCGCTAGCAATAACAACAGAAGTACTCCCCGCCCCCAAGA
TGGTCTCAGTCTCCTGTTTTTTCAACTGTTGCACACACATAAGTCACTGG
CCTGATCTGCTTCCCACTCAGAAACTGGGCAAGAATGGGTTATGCAGGAG
AGTAGGAGTCATAATACCATCGCCACACTCAGTGCTGCTTAAACCCAAGC
CACATCATCACTAAGTCTGCTATGATCATTCAGTGCCATTTGACAAGCTT
GACTGTCTATCTTCTGATCACTAAAATAGGTGTGTGAAAGACCTTTGGTG
GATGTTTT

NCCGAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTCTATTGAAAATTCGTATT
AAACTAATGTCTTTTATTCACTTGGTAAATCTGTAACACCTAAAGACAAG
AACAGAAAAAATTTCAAGATTTCTCGAGAATGTTACAGGGTAAACCTGCA
AATCCAGCACAGTGGAGGGTGAATCAGAAGGACTGCCATGAATTTGAAAT
CTGCCTGGACAGTGTGGCAAGGCGCAGTTCAGCCAGGGCTCCCTGCTGAG
AGGCTGCTTGTGTGTTTACACCTCTGTAGAACAGATAAAAGCAAATGCAT
CAGGTATCACAAGATTCAAACCCCAACTCAAAAGCACCTATGATTGATTT
CTGAATATTTACAACAACCTTCATATTAACCTCAGGGAACCCCACAGATA
GCCCATTTCATTCAGCCTTCATCTGAGTAAGACACTGGAGACAGGGTGAC
TGTGGAGACATGTGGCATGCTGGTAGAGACATGGTGCATGCTGGTGGAGA
CATGGTGCATGCTGATGGAGACATGGTACATACTGGTGGAGACAGGGTCC
ATGCTGGTGGAGACAGGATGCATGCTGGTGGAGACATGATGCATGCTGGT
GGAGACAGGGTGCATACAGGTGGAGACAGGGTACATGCTGATGGAGACAT
GTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_a14.b1 MSMg01no139_a14.b1 CHROMAT_FILE:
MSMg01no139_a14.b1 PHD_FILE: MSMg01no139_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:17 2005
         (663 letters)



>mm_chr5_91704659_91705716
          Length = 1058

 Score = 1164 bits (602), Expect = 0.0
 Identities = 642/658 (97%), Gaps = 7/658 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaaaagcacatgctcccctgatcttagatagaaatagcatgattctccaaggga 66
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaaaagtacatgctcccctgaccttagatagaaatagcatgattctccaaggga 266

                                                                       
Query: 67  gaaacaacatatcatagggcacaaaagtatttaaatatctagacaagcaaatagtggacc 126
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 267 gaaacaacatatcatagggcacaaaagtatttaaatatctaga----caaatagtggacc 322

                                                                       
Query: 127 agttgtcaaaacctgatgtctgtgacttgacggatatatcattgtcataaaaggaaaata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agttgtcaaaacctgatgtctgtgacttgacggatatatcattgtcataaaaggaaaata 382

                                                                       
Query: 187 aatccaaagtgttatcatagggaaatggctaatcaagattctggatcggaaactgaagat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatccaaagtgttatcatagggaaatggctaatcaagattctggatcggaaactgaagat 442

                                                                       
Query: 247 gctgtagaaattctttcattcaaaaactatagccttaattacgttgaaaa-ggaaaaaaa 305
           |||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 443 gctgcagaaattctttcattcaaaaactatagccttaattatgttgaaaagggaaaaaaa 502

                                                                       
Query: 306 tttctatctgttcttcaattagctctcaaggccgcaccctggagtctggaatagaggcac 365
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 --tctatctgttcttcaattagctctcaaggccgcaccctggagtctggaatagaggcac 560

                                                                       
Query: 366 tcgctagcaataacaacagaagtactccccgcccccaagatggtctcagtctcctgtttt 425
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgctagcaaaaacaacagaagtaccccccgcccccaagatggtctcagtctcctgtttt 620

                                                                       
Query: 426 ttcaactgttgcacacacataagtcactggcctgatctgcttcccactcagaaactgggc 485
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 621 ttcaactgttgcacacacataagtcactggcctgatctgctttccattcagaaactgggc 680

                                                                       
Query: 486 aagaatgggttatgcaggagagtaggagtcataataccatcgccacactcagtgctgctt 545
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 aagaatgggttatgcaggagagtaggagtcataataccattgccacactcagtgctgctt 740

                                                                       
Query: 546 aaacccaagccacatcatcactaagtctgctatgatcattcagtgccatttgacaagctt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacccaagccacatcatcactaagtctgctatgatcattcagtgccatttgacaagctt 800

                                                                     
Query: 606 gactgtctatcttctgatcactaaaataggtgtgtgaaagacctttggtggatgtttt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gactgtctatcttctgatcactaaaataggtgtgtgaaagacctttggtggatgtttt 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1058
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1048
Effective search space:   684344
Effective search space used:   684344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_a14.g1 MSMg01no139_a14.g1 CHROMAT_FILE:
MSMg01no139_a14.g1 PHD_FILE: MSMg01no139_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:17 2005
         (623 letters)



>mm_chr5_91878841_91879863
          Length = 1023

 Score = 1120 bits (579), Expect = 0.0
 Identities = 594/599 (99%), Gaps = 1/599 (0%)
 Strand = Plus / Minus

                                                                        
Query: 26   actaatgtcttttattcacttggtaaatctgtaacacctaaagacaagaacag-aaaaaa 84
            |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1023 actaatgtcttttattcacttggtgaatctgtaacacctaaagacaagaacagaaaaaaa 964

                                                                        
Query: 85   tttcaagatttctcgagaatgttacagggtaaacctgcaaatccagcacagtggagggtg 144
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 963  tttcaagatttctcgagaatgttacagggtacacctgcaaatccagcacagtggagggtg 904

                                                                        
Query: 145  aatcagaaggactgccatgaatttgaaatctgcctggacagtgtggcaaggcgcagttca 204
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 903  aatcagaaggactgccatgaattcgaaatctgcctggacagtgtggcaaggcgcagttca 844

                                                                        
Query: 205  gccagggctccctgctgagaggctgcttgtgtgtttacacctctgtagaacagataaaag 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  gccagggctccctgctgagaggctgcttgtgtgtttacacctctgtagaacagataaaag 784

                                                                        
Query: 265  caaatgcatcaggtatcacaagattcaaaccccaactcaaaagcacctatgattgatttc 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  caaatgcatcaggtatcacaagattcaaaccccaactcaaaagcacctatgattgatttc 724

                                                                        
Query: 325  tgaatatttacaacaaccttcatattaacctcagggaaccccacagatagcccatttcat 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  tgaatatttacaacaaccttcatattaacctcagggaaccccacagatagcccatttcat 664

                                                                        
Query: 385  tcagccttcatctgagtaagacactggagacagggtgactgtggagacatgtggcatgct 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tcagccttcatctgagtaagacactggagacagggtgactgtggagacatgtggcatgct 604

                                                                        
Query: 445  ggtagagacatggtgcatgctggtggagacatggtgcatgctgatggagacatggtacat 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  ggtagagacatggtgcatgctggtggagacatggtgcatgctgatggagacatggtacat 544

                                                                        
Query: 505  actggtggagacagggtccatgctggtggagacaggatgcatgctggtggagacatgatg 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  actggtggagacagggtccatgctggtggagacaggatgcatgctggtggagacatgatg 484

                                                                       
Query: 565  catgctggtggagacagggtgcatacaggtggagacagggtacatgctgatggagacat 623
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  catgctagtggagacagggtgcatacaggtggagacagggtacatgctgatggagacat 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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