Query= MSMg01no139_h04.b1 MSMg01no139_h04.b1 CHROMAT_FILE:
MSMg01no139_h04.b1 PHD_FILE: MSMg01no139_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:51 2005
(607 letters)
>mm_chr5_120152001_120153008
Length = 1008
Score = 1122 bits (580), Expect = 0.0
Identities = 598/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctaaacctttcggaacgaacagcagtccatccagttgggaggaagtattttg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctaaaccttttggaacgaacagcagtccatccagttgggaggaagtattttg 264
Query: 65 agagccggggaggagatggagacaaagctctcccactccgtgagaccacaaagccaccga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagccggggaggagatggagacaaagctctcccactccgtgagaccacaaagccaccga 324
Query: 125 attcccgagtaaggcttgtcggtcccttctctgagagtcaaaagagagcttcggccagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcccgagtaaggcttgtcggtcccttctctgagagtcaaaagagagcttcggccagtg 384
Query: 185 gaaacaagataagaatgcagggccattgtgcatgctaggagatttgagtggatccctgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaacaagataagaatgcagggccattgtgcatgctaggagatttgagtggatccctgtc 444
Query: 245 aatgcccgaggaccacttcagacagaccctgtgttctggggattaattaaagtaagtggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgcccgaggaccacttcagacagaccctgtgttctggggattaattaaagtaagtggg 504
Query: 305 aagcagacgacatcacgcccaggctccggctgccaacggccgggccaggaagcaagaaaa 364
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 aagcagacaacatcacgcccaggctccggctgccaacggcggggccaggaagcaagaaaa 564
Query: 365 agtctgtagtttacgttttcaaattaaaaacatcaacgttggttttgaagatgtgttccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtctgtagtttacgttttcaaattaaaaacatcaacgttggttttgaagatgtgttccc 624
Query: 425 tccactcttcatcaactcaaggcgggctgggaatgacgaatggctggtaggatggtcaaa 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 tccactcttcatcaactcaaggcgggctgggaatgacgaatgactggtaggatggtcaaa 684
Query: 485 tgggccgtggagcggaaatactaactgtgccattagacagagcaccttttggaagtcatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggccgtggagcggaaatactaactgtgccattagacagagcaccttttggaagtcatt 744
Query: 545 gactacaggggcatatcctgtagctctcctctgacccacaagcaggataggg-acagtga 603
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 745 gactacaggggcatatcctgtagctcccctctgacccacaagcaggataggggacagtga 804
Query: 604 gtgg 607
||||
Sbjct: 805 gtgg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_h04.g1 MSMg01no139_h04.g1 CHROMAT_FILE:
MSMg01no139_h04.g1 PHD_FILE: MSMg01no139_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:51 2005
(560 letters)
>mm_chr5_120193671_120194630
Length = 960
Score = 895 bits (463), Expect = 0.0
Identities = 515/559 (92%), Gaps = 41/559 (7%)
Strand = Plus / Minus
Query: 1 ccatatctgggaatctgtctttttttaaagtaagttcttagcggcaggttctgggtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ccatatctgggaatctgtctttttttaaagtaagttcttagcggcaggttctgggtctct 598
Query: 61 gagacccgttatcccggaagacttaatcatgagaatgcatccaggaaacaccagagagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gagacccgttatcccggaagacttaatcatgagaatgcatccaggaaacaccagagagcc 538
Query: 121 gtcagcaacgcagagagcaatcaacaacgcagatgtgcttggctctgcagccgagtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtcagcaacgcagagagcaatcaacaacgcagatgtgcttggctctgcagccgagtagct 478
Query: 181 ttgtttgaagagccatgctccccccaggcaccagagcagcgtttaatttctctggactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgtttgaagagccatgctccccccaggcaccagagcagcgtttaatttctctggactct 418
Query: 241 gtccttgatgtgttgcctcagagagagcccacagcagagatgtaatggaggcatcctgtg 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 417 gtccttgatgtgttgcctcagagagagcccacagcagagatgtgatggaggcatcccgtg 358
Query: 301 ggggcacgctgcatccccgcatgcctttgaaccaaccccacatcccaacatgcatcagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggggcacgctgcatccccgcatgcctttgaaccaaccccacatcccaacatgcatcagtg 298
Query: 361 tgagcctttgaaccaaccccatatcccagcatgcatcagtgcgagcctttgaaccaaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgagcctttgaaccaaccccatatcccagcatgcatcagtgcgagcctttgaaccaaccc 238
Query: 421 catatcccagcatgcctcagagggagcctttgaaccaaccccatatcccagcatgcctca 480
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 catatcccagcatgcctcagagggagcctttgaacca----------------------- 201
Query: 481 gagggagcctttgaaccagtcccacagaccggcattgacacaacactcattggtttccaa 540
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 ------------------gtcccaaagaccggcattgacacaacactcattggtttccaa 159
Query: 541 acagtggcccgggcgagag 559
|||||||||||||||||||
Sbjct: 158 acagtggcccgggcgagag 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
