BAC Information

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BAC

Clone NameMSMg01-139J09
Chromosome5 (Build37)
Map Location 90,296,882 - 90,297,284
singlet/doubletsinglet
Overlap geneAdamts3
Upstream geneSlc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J09.T7 (MSMg01no139_j09.b1)MSMg01-139J09.TJ (MSMg01no139_j09.g1)
ACCAG344947AG344948
length720717
length of high quality
(start - end)
405 (42 - 446)323 (76 - 398)
definitionCHROMAT_FILE: MSMg01no139_j09.b1 PHD_FILE: MSMg01no139_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:02 2005CHROMAT_FILE: MSMg01no139_j09.g1 PHD_FILE: MSMg01no139_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCTCCAAACACGTACATGTTTCTCCCAGATCCTACTGTCTTATAAAT
CAATTATCTCACTGTGTTCACGCCTTACAATTCAAGCCACCAAGAATAAG
TAATGGACGCAATTATTAAAACAGACCTTCAGGAAGGCAGACATGGAACC
TCTCATTCTCAGCAGTAGGAAATTAGTTCCCACACTAGACGAGTCCAAAC
TTTTTTTTTTTTAATTAAAAACCCATTAGATCCTTGCCTTGTCTCTTTCT
ACACACTAAGCATCTTGGGTAGATTTGGTTATTCTTTCTGTAAGTTACAA
GTAAAGAGCCATTAGCTCAAGCCTACTTCCCAAGAGAGTGTGTGTCCTCA
GAGGGCCCTAGGCATCCCTCCACCTCTAACCTTACCCTCCACTGGTGGGG
GATAAGGATACATGCTGCTATGAAGGCGGGATGTGTAAGAGGCCCGTTCA
GGCTTTTACCTCTCTCCCCCTCCTTTTTGACATGTTCTATCACCACCATT
CTTTCTCTCTTTGTTTTTACTTTGGCCGTCCCCGTCTCCCCTGTCTCTCC
CTTTTGGCCCCCGTTTCCCTTTGCTTTCTCCCTGTTCCCTTGGTTTCCCC
CTGCTTTTTTTTTTTGCCCCCTTCCTTCCCGCCACCCCTCCCCGTCCGTT
TGTTTCTTATTATTTCTTTT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATCAACATTCCATTATGGAAAG
GGAAAGAACCTATTACTCTCCCTCCCTTGGGAGCTATAAGCGCTTAGTCC
TTGCTGGAGGAGGGGTATCATGCCTCTCAGGTGTGTAGCCTTCTGCTGCC
AAATTGCCCTTGATCAGTCATTGAGCCCTGATGCAGACTTGTGTATGTAA
TCTGAATTAGATGCAGGAACACACACACACACACACACACACACACACAC
ACACACACACACACACACACTCATATATATGAAAGTATGACAAGCATTTA
TTGGGAAGAAAAGGTTGTTTAGAACCTGCAGCAGGGGGAGATGATAAAAT
ATTAATAAAGGACAACCCCCAATAAATTTCTGTATTTATGAGATTGCAAT
ACATACATACTTATATACATACATACATACATACATACATACATACATAC
ATACCTTTATACAGTAAAACAATCTTCCTAGGTCTAGTTGGCTTTCCTTG
TCTAGCACACGCTGTGTTTGACACTGAAATGTACTGTTGTGTGTCGTTGT
GCACGTGCCTCCTTACACTTTTATCTACATCGTGTGAGTCGATGCCTACC
TTGCCTACCTTCTGATTTCCTCTTGTTTTATCCCCTGTATCCACCTGTTT
TATACCGCTTTAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j09.b1 MSMg01no139_j09.b1 CHROMAT_FILE:
MSMg01no139_j09.b1 PHD_FILE: MSMg01no139_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:02 2005
         (405 letters)



>mm_chr5_90296680_90297484
          Length = 805

 Score =  710 bits (367), Expect = 0.0
 Identities = 394/403 (97%), Gaps = 2/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtctccaaa-cacgtacatgtttctcccagatcctactgtcttataaatcaat 63
           |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgtctccaaaacatgtatatgtttctcccagatcctactgtcttataaatcaat 262

                                                                       
Query: 64  tatctcactgtgttcacgccttacaattcaagccaccaagaataagtaatggacgcaatt 123
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 263 tatctcactgcgttcacgccttacaatttaagccaccaagaataagtaatggacgcaatt 322

                                                                       
Query: 124 attaaaacagaccttcaggaaggcagacatggaacctctcattctcagcagtaggaaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attaaaacagaccttcaggaaggcagacatggaacctctcattctcagcagtaggaaatt 382

                                                                       
Query: 184 agttcccacactagacgagtccaaactttttttttttt-aattaaaaacccattagatcc 242
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 agttcccacactagatgagtccaaactttttttttttttaattaaaaacccattagatcc 442

                                                                       
Query: 243 ttgccttgtctctttctacacactaagcatcttgggtagatttggttattctttctgtaa 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ttgccttgtctctttctacacactaagcatcttgagtagatttggttattctttctgtaa 502

                                                                       
Query: 303 gttacaagtaaagagccattagctcaagcctacttcccaagagagtgtgtgtcctcagag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttacaagtaaagagccattagctcaagcctacttcccaagagagtgtgtgtcctcagag 562

                                                      
Query: 363 ggccctaggcatccctccacctctaaccttaccctccactggt 405
           ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 ggccctaggcatctctccacctctaaccttaccctccactggt 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)