Query= MSMg01no139_j14.b1 MSMg01no139_j14.b1 CHROMAT_FILE:
MSMg01no139_j14.b1 PHD_FILE: MSMg01no139_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:03 2005
(323 letters)
>mm_chr5_26752933_26753656
Length = 724
Score = 557 bits (288), Expect = e-163
Identities = 312/320 (97%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 5 gaattc-atatggttactcacctggaacataactagaaccttaagtttttaggggcacaa 63
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatatggttacagacctggaacataactagaaccttaagtttttaggggcacaa 264
Query: 64 ttggaacaatcatttataacacaagggcagccaaagatttctcacataaatgtgtaacaa 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtaacaatcatttataacacaagggcagccaaagatttctcacataaatgtgtaacaa 324
Query: 124 acactaacagggatggaaagatgtctcagtaggaaaagatgctggctgtaaatcatgacg 183
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct: 325 acactaacagggatggaaagatgtctcagtaagtaaagatgctggctgtaaagcatgacg 384
Query: 184 accaagttctgtctctagggcagcagggtgtaagaaagacaagtcaccacctgtgggcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accaagttctgtctctagggcagcagggtgtaagaaagacaagtcaccacctgtgggcag 444
Query: 244 tggttcattcatgtatggccccatcctcactgtgtgtctccatgtacacacatgtgcatg 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggttcattcatgtatggtcccatcctcactgtgtgtctccatgtacacacatgtgcatg 504
Query: 304 tacacacacacacacacaca 323
||||||||||||||||||||
Sbjct: 505 tacacacacacacacacaca 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space: 224510
Effective search space used: 224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_j14.g1 MSMg01no139_j14.g1 CHROMAT_FILE:
MSMg01no139_j14.g1 PHD_FILE: MSMg01no139_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:03 2005
(448 letters)
>mm_chr5_26904222_26905069
Length = 848
Score = 704 bits (364), Expect = 0.0
Identities = 379/386 (98%), Gaps = 5/386 (1%)
Strand = Plus / Minus
Query: 63 aggcatggtggcacacacctttaataccagcacttgggaggcagaggcaggtgaatttct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aggcatggtggcacacacctttaataccagcacttgggaggcagaggcaggtgaatttct 789
Query: 123 gagttcgaggccagcctggtctacagagtgagtttcaggacatccagggctacacagaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gagttcgaggccagcctggtctacagagtgagtttcaggacatccagggctacacagaga 729
Query: 183 aaccctgtctcgaaaaaccaaaaataaataaaaagaaagaaagaaagaaagaaagagaga 242
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 aaccctgtctcgaaaaaccaaaaataaataaaaagaaagaaagaaagaaaga----gaga 673
Query: 243 aagaaagaaagaaggaaagaaagttaaaaagccagaataataaagtatagccatgttctt 302
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 aagaaagaaagaaggaaagaaaga-aaaaagccagaataataaagtatagccatgttctt 614
Query: 303 ggtgtcttattcaaagaattgagaatgtatatacaaatagcacagcattgcagagtttta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggtgtcttattcaaagaattgagaatgtatatacaaatagcacagcattgcagagtttta 554
Query: 363 tttaaagtgacattggaggctagacatgtacaagggaacaggtagataggaatgaagctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttaaagtgacattggaggctagacatgtacaagggaacaggtagataggaatgaagctg 494
Query: 423 atcaaggcctcattttgtgggtttac 448
||||||||||||||||||| ||||||
Sbjct: 493 atcaaggcctcattttgtgcgtttac 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
