Query= MSMg01no140_b05.b1 MSMg01no140_b05.b1 CHROMAT_FILE:
MSMg01no140_b05.b1 PHD_FILE: MSMg01no140_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:41 2005
(659 letters)
>mm_chr5_5290820_5291877
Length = 1058
Score = 1112 bits (575), Expect = 0.0
Identities = 637/665 (95%), Gaps = 14/665 (2%)
Strand = Plus / Minus
Query: 4 ggaattcaatatctggcgttgacacctagggtcagtcatagaccggtgaatacagatttc 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggaattcaatatctggtgttgacacctagggtcagtcatagaccggtgaatacagatttc 605
Query: 64 taatgcaagtcagtaatgattgccaacaaaataaggaagggacagaaaaatgaaaagaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taatgcaagtcagtaatgattgccaacaaaataaggaagggacagaaaaatgaaaagaaa 545
Query: 124 tagcattaaaaatcctgtgatacttggggtttcgaaggactcaattagactttcatatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tagcattaaaaatcctgtgatacttggggtttcgaaggactcaattagactttcatatat 485
Query: 184 atcactacaaaattagacagttaaatttttctttcctcgttcctgcctggtaaagaactg 243
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct: 484 atcactacaaaattagacagttaaatttttatttcttcattcctgcctggtaaagaactg 425
Query: 244 tcttttattgtctaaggaatctgtgcagatgactcaacagtcacgtatagttaagcatgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcttttattgtctaaggaatctgtgcagatgactcaacagtcacgtatagttaagcatgg 365
Query: 304 cgtccatagtccttggcactgttactgatgttaacaaaaaaatccacagcaatagattat 363
|||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 364 tgtccgtagtccttggcattgttactgatgttaacaaaaaa-tccacagcaatagattat 306
Query: 364 tataaaagtaaaccagaatagcaatctattgtgtgctgtagtttaagtactatggtcttt 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tataaaagtaaactagaatagcaatctattgtgtgctgtagtttaagtactatggtcttt 246
Query: 424 tgaaagcgtctaattacggtaacttaataaagcctcatgtta---------gtatcccag 474
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 tgaaagcgtctaattacggtaacttaataaagcctcatgttactcatgttagtatcccag 186
Query: 475 tgggctgtgacctaacctgagctttctgagactgtgggctgtccattctacactgccgta 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 185 tgggctgtgacctaacctgagctttctgagactgtgggctgtccattctacactgctgta 126
Query: 535 atcactggtgacttcagacagtttaaataccattcatgtgagcaaacggtgtttacagtg 594
||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 125 atcactggtgacttcag----tttaaataccatccatgtgagcaaacagtgttcacagtg 70
Query: 595 atggtatcacctcaccatcccagcgcctgtaattaactggcaggcttccccttccctccc 654
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgttatcacctcaccataccagcgcctgtaattaactggcaggcttccccttccctccc 10
Query: 655 attcc 659
|||||
Sbjct: 9 attcc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_b05.g1 MSMg01no140_b05.g1 CHROMAT_FILE:
MSMg01no140_b05.g1 PHD_FILE: MSMg01no140_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:41 2005
(630 letters)
>mm_chr5_5175092_5176121
Length = 1030
Score = 1135 bits (587), Expect = 0.0
Identities = 622/635 (97%), Gaps = 8/635 (1%)
Strand = Plus / Plus
Query: 1 agactctcacatgtaattcactccaacatctgggattaattggcagtcttactcaatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactctcacatgtaattcactccaacatctgggattaattggcagtcttactcaatttc 260
Query: 61 cctgggaggaattcttgacagataactgtaattgcaaaagcagtttctgaaatttctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggaggaattcttgacagataactgtaattgcaaaagcagtttctgaaatttctatc 320
Query: 121 c-agatgagtaatcaagtctttaggagtttggactatgagagtggtaaacactctatgtg 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagatgagtaatcaagtctttaggagtttggactatgagagtggtaaacactctatgtg 380
Query: 180 gtcatttttacattcatatgttgctagtcttttccaacccatgagtaatagcatctgtaa 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatttttacattcatatgttgttagtcttttccaacccatgagtaatagcatctgtaa 440
Query: 240 acaatgacaggctcatggtacagatattacgtcaatcgtaattagtcatcttagataaag 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 acaatgacaggctcatggtacagatattatgtcaatcgtaattagtcatcttagataaag 500
Query: 300 agcctattaaaaataattgccaatttcccaatattcagattcattctactgaaaaaaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 agcctattaaaaataattgccaatttcccaatattcagattcattctactgaaaaaa-tt 559
Query: 360 atataaacttatctgttacaatttgcatacaagaccctctttttgtaaaaaaa-taaaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 atataaacttatctgttacaatttgcatacaagaccctctttttgtaaaaaaaataaaat 619
Query: 419 aaataaa-taaataaataaaataaattatccctaaaaacaaagtggttctaaattaatca 477
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aa-taaaataaataaataaaataaattatccctaaaaacaaagtggttctaaattaatca 678
Query: 478 cttctgctgggtatgacagtacttgaaagtaatcccagtattcaggctgatgcaagagga 537
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 cttctgctgggtatgacagtacttgaaagtaatcccagtattcgggctgatgcaagagga 738
Query: 538 ttatgatcacaaggccagtctaaattacatagcaaaatcttgctacaatatttaagaaaa 597
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttatgatcccaaggccagtctaaattacatagcaaaatcttgctacaatatttaagaaaa 798
Query: 598 aaa---cagtaaaaattaagaataaacatcttgtg 629
||| |||||||||||||||||||||||||||||
Sbjct: 799 aaaaaacagtaaaaattaagaataaacatcttgtg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
