BAC Information

Click to search

BAC

Clone NameMSMg01-140C03
Chromosome5 (Build37)
Map Location 15,185,026 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140C03.T7 (MSMg01no140_c03.b1)MSMg01-140C03.TJ (MSMg01no140_c03.g1)
ACCAG345356AG345357
length702701
length of high quality
(start - end)		646 (57 - 702)618 (84 - 701)
definitionCHROMAT_FILE: MSMg01no140_c03.b1 PHD_FILE: MSMg01no140_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:46 2005CHROMAT_FILE: MSMg01no140_c03.g1 PHD_FILE: MSMg01no140_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCCCCNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTACTAGATACTCAAAAAAGAATTAGTGAAATACT
CCTCAAATTATTCACAAAGTAGAAACAGAAGAAACATAGCTAAACTCATT
CTATGTGTTCATAGTCACCCTGATACAGAAACCACACAAAGACTCAACAA
AGAAAGAGGAATTCAGTCCAATTTCTCTTTTTTAACCACTTCATACTAAT
TTACTTATCTTCACAATAAGGAAGAATATGTCTTCCTTGTGTATTTAAAA
TTATGAGATTAGATACTGATATTGGACAGAAGGTAATTGGGTTCATAAGA
AGTGATACATAATAGAAAAGAACATGTTCATGGATTTGGAATCAGGACTA
TGCTGTGTATTGGTTATTGAAAATTAATATCAGAGTGACACAGTTGTGTG
TCTTTAGGAAGATGACTGGTGGGAGACACTGATCCTAAAATGCCTTCTGT
ATTTTAGTCTATTTTCCTAGAAAAACATAGGAAAAAGAATATATTGGGGT
ACATCCAGGAAACAGGTCTGGAAGCCATTAAATATTCCCAGAGGAAAAGT
TTCAACCAGTTGCTAAAAGTGTTTTTACCAGGTGGGATGAAAGATATCCT
TTCAAATACAATTGGTGTGAAATGGGTGCGCGAAAGCTTTACCTATTCAC
CC

CCCCNNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGA
GCCCAAAAGGCAGTGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTC
TGGAAGAGCAGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGC
CATGCTGGATGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAAT
GCTTCTAGAGAACTCCACACTGAGTCAGTGTTTTCTGTTCCCAAGCAAAC
CACAGCACTGATCTCCATCTGTTTTTCTCTGACTCTTAAAACATCCTTCC
AAATTGAAAAACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGATT
GGAAAGGAGCACCAATTTTGTTCAAAAGACAACTTCAGAAAACAAAAGAG
AAGCCTCAAATGGGCCAAAAGCCACAAATTGAAAAACAAAAGAAAAACAA
GGCTGGCTGTCTACTGCCAGCAGGAGTTCACCAGGGAGAGGAGCTCTGAC
TCCAAAATAGTCACTTTTCCATTTTGTCAATGATGGCAAAAGGCCATGGG
TGCTGGCTAAAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGTCTCTTT
GTTGCAAGAACTGCATTCTCACTTGTATCCAATGCTGATAACTGGCAGCA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_c03.g1 MSMg01no140_c03.g1 CHROMAT_FILE:
MSMg01no140_c03.g1 PHD_FILE: MSMg01no140_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:46 2005
         (618 letters)



>mm_chr5_15184826_15185844
          Length = 1019

 Score = 1110 bits (574), Expect = 0.0
 Identities = 607/618 (98%), Gaps = 1/618 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagtggagaagtgttcatgggtgcactagccag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 818 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 759

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 699

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 639

                                                                       
Query: 181 tccacactgagtcagtgttttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 579

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 519

                                                                       
Query: 301 tgccttgccaaaggattggaaaggagcaccaatttt-gttcaaaagacaacttcagaaaa 359
           ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 518 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 459

                                                                       
Query: 360 caaaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 419
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 399

                                                                       
Query: 420 ctggctgtctactgccagcaggagttcaccagggagaggagctctgactccaaaatagtc 479
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtc 339

                                                                       
Query: 480 acttttccattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaagg 539
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaagg 279

                                                                       
Query: 540 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 219

                             
Query: 600 tgctgataactggcagca 617
           ||||||||||||||||||
Sbjct: 218 tgctgataactggcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |