Query= MSMg01no140_c11.b1 MSMg01no140_c11.b1 CHROMAT_FILE:
MSMg01no140_c11.b1 PHD_FILE: MSMg01no140_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:47 2005
(599 letters)
>mm_chr5_98929867_98930865
Length = 999
Score = 1100 bits (569), Expect = 0.0
Identities = 598/623 (95%), Gaps = 24/623 (3%)
Strand = Plus / Plus
Query: 1 agaaaaagaaagcatttcctaccaatcagagtctagtgagaccgtgaggacattttgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agaaaaagaaagcatttcctaccaatcagagtctagtgagaccgtgaggacattttgcat 236
Query: 61 ggtgcttctggtgaggcctcatgaaccttattttcccactcaacagtgaggatgtaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggtgcttctggtgaggcctcatgaaccttattttcccactcaacagtgaggatgtaaaca 296
Query: 121 gtacatggctgacttgtttgagctttgaaatatgttattatcaaaactgatataaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtacatggctgacttgtttgagctttgaaatatgttattatcaaaactgatataaaaaca 356
Query: 181 gtgtttactact------------------------ctccattcatgaccagtgaaagaa 216
|||||||||||| ||||||||||||||||||||||||
Sbjct: 357 gtgtttactactgatataaaaacagtgtttactactctccattcatgaccagtgaaagaa 416
Query: 217 gccactgtaacctggaccaggaaaagctatgaattaggaacttctaacatacccatttcc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gccactgtaacctggaccaggaaaagctatgaattaggaacttctaacatacccatttcc 476
Query: 277 tgtgttgaaaactttatgaaacataagatcgcattgtgtatgaccaattacactgtgctg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtgttgaaaactttatgaaacataagatcgcattgtgtatgaccaattacactgtgctg 536
Query: 337 acacaatcttttgcctcctttctatcttccaacttctctaacgtgtcccctttcagaaaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acacaatcttttgcctcctttctatcttccaacttctctaacgtgtcccctttcagaaaa 596
Query: 397 caagggtatcagagaggtgcttacttccttctcaatagaatccatacttgtccactgtaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caagggtatcagagaggtgcttacttccttctcaatagaatccatacttgtccactgtaa 656
Query: 457 cccactgtggaaattatatgattaataaagttttaccattattataaacaggttttcaac 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cccactgtggaaattatatgattaataaagttttaccattattataaacaggttttcaac 716
Query: 517 acttacaaatgtatatcaacttccctttaactagaaatgtatagttgaatatcacttcat 576
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 717 acttacaaatgtatatcaacttccctttaactagaaatttatagttgaatatcacttcat 776
Query: 577 tgttaatccatttgtctttggat 599
|||||||||||||||||||||||
Sbjct: 777 tgttaatccatttgtctttggat 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_c11.g1 MSMg01no140_c11.g1 CHROMAT_FILE:
MSMg01no140_c11.g1 PHD_FILE: MSMg01no140_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:48 2005
(524 letters)
>mm_chr5_99085100_99086026
Length = 927
Score = 557 bits (288), Expect = e-163
Identities = 375/442 (84%), Gaps = 62/442 (14%)
Strand = Plus / Minus
Query: 3 ggaattctaagtgaaaacatgagttaagaaggtgcctagttctatgacaacccagttttc 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaattctaagtgaaaacatgagtcaagaaggtgcctagttctatgacaacccagttttc 328
Query: 63 cttgtttatgtacataataacaactttatttactgaactgatgctgaggaaaa---aata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 cttgtttatgtacataataacaactttatttactgaactgatgctgaggaaaaaataata 268
Query: 120 ttaactaagcagttctaattagtagtagaagtaatgtttgtatatctaaactgtttctgt 179
||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 ttaactaagcagtcctaattattagtagaagtaatgtttatatatctaaactgtttctgt 208
Query: 180 atcaaatatatatatatatgtatatgtatatatgtgtatatatatatacatatatatata 239
|||||||||
Sbjct: 207 atcaaatat--------------------------------------------------- 199
Query: 240 tacatatatatatggctttt-ttttgatggtttctctgtatagctccagctgtcctgaaa 298
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 198 ---atatatatatggcttttctttt-atggtttctctgtatagctccagctgtcctgaaa 143
Query: 299 ctcactctgtaaaccaggctggcctcaaactcagaaatccgcctacctctgcctaccaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctcactctgtaaaccaggctggcctcaaactcagaaatccgcctacctctgcctaccaag 83
Query: 359 tgctgggattaaaggtgtgcaccaccactgcctggctaaatatctatatttttaagcaaa 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tgctgggattaaaggcgtgcaccaccactgcctggctaaatatctatatttttaagcaaa 23
Query: 419 aa---aaaattgattttctctg 437
|| |||||||||||||||||
Sbjct: 22 aacaaaaaattgattttctctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space: 471338
Effective search space used: 471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
