Query= MSMg01no140_h18.b1 MSMg01no140_h18.b1 CHROMAT_FILE:
MSMg01no140_h18.b1 PHD_FILE: MSMg01no140_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:13 2005
(448 letters)
>mm_chr5_39285562_39286408
Length = 847
Score = 797 bits (412), Expect = 0.0
Identities = 424/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 21 aaagagttgagtaatgtatccctgagtgcaaagccttgctataatgacacacagatcagt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaagagttgagtaatgtatccctgagtgcaaagccttgctataatgacacacagatcagt 588
Query: 81 atgcagattctaccatggcacttgaatatgacagtttgccatagtttacacagaccatga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atgcagattctaccatggcacttgaatatgacagtttgccatagtttacacagaccatga 528
Query: 141 aagacacagggatcgctaacaggcagattccctttcgtctttaccagctccccacgtaat 200
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aagacacagggatcgct-acaggcagattccctttcgtctttaccagctccccacgtaat 469
Query: 201 ctgaagctgtaaactccgttaggagccagctctacaaactaatgggcaaattacatggct 260
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 468 ctgaagctgtaaactccgttaggagccacctctacaaactaaagggcaaattacatggct 409
Query: 261 tggagtcaggaggtgtcagctcccgcaggagccccctgttcgttctgcatattaacatat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tggagtcaggaggtgtcagctcccgcaggagccccctgttcgttctgcatattaacatat 349
Query: 321 cacttctcttcggctggagcttgcttatatgtaaagttaaaaataatgcctttatcgaaa 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cacttctcttcggctggagcttgcttatatgtaaagttaaaaataatgcctttatcgaaa 289
Query: 381 gtcagattctgagactgaatgaggtcatgagtgttaagctttgggaaagcatgaagtact 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 288 gtcagattctgagactgaatgaggtcatgagtgttaagctttgggaaagcatgaagcact 229
Query: 441 gtgaatgt 448
||||||||
Sbjct: 228 gtgaatgt 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_h18.g1 MSMg01no140_h18.g1 CHROMAT_FILE:
MSMg01no140_h18.g1 PHD_FILE: MSMg01no140_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:14 2005
(554 letters)
>mm_chr5_39163066_39164016
Length = 951
Score = 984 bits (509), Expect = 0.0
Identities = 542/555 (97%), Gaps = 5/555 (0%)
Strand = Plus / Plus
Query: 1 tgcttcacagatggggcaaccctagaactctgttttgaactcttaatattttatagtcca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tgcttcacagatggggcaaccctagaactctgttttggactcttaatattttatagtcca 260
Query: 61 ggg-ttgaaaaaaataaaaaggtataaagttgaatttgttgctttatagtcctgactgta 119
||| ||||||| |||||||| |||||||||||||||||| ||||||||| ||||| |
Sbjct: 261 gggtttgaaaa----aaaaaggtctaaagttgaatttgttgccttatagtcccgactgga 316
Query: 120 tctgtggctttccatagtatattcctgatatatggtcggtaaataaagccatagatttta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctgtggctttccatagtatattcctgatatatggtcggtaaataaagccatagatttta 376
Query: 180 ataaggcagaggatataattattcctaagggtgcgatttaaaatatttatgttgtaattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataaggcagaggatataattattcctaagggtgcgatttaaaatatttatgttgtaattt 436
Query: 240 gtctagttattagggtccagttcaatttacttttgggttagatggtcagatgcatactcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtctagttattagggtccagttcaatttacttttgggttagatggtcagatgcatactcc 496
Query: 300 tatgggtaagtcgagtagttaattacaactatacatacttatcaaatggagacgctgaag 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatgggtaagtcaagtagttaattacaactatacatacttatcaaatggagacgctgaag 556
Query: 360 taagaacacttacgcacaaaactcctctcagtcagggttccgactaatgctctcactggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagaacacttacgcacaaaactcctctcagtcagggttccgactaatgctctcactggc 616
Query: 420 aatctcagagactgagggaggagcaagcctgcctagctgcactctcagttatccctggaa 479
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 617 aatctcagagactgagggaggagcaagcctgcctacctacactctcagttatccctggaa 676
Query: 480 aggcagagagaagtcacaggggagcccagtttccaggtaggcaacagggcaagatagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggcagagagaagtcacaggggagcccagtttccaggtaggcaacagggcaagatagact 736
Query: 540 tgccaggcacgtcgg 554
|||||||||||||||
Sbjct: 737 tgccaggcacgtcgg 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 951
Length adjustment: 10
Effective length of query: 544
Effective length of database: 941
Effective search space: 511904
Effective search space used: 511904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
