Query= MSMg01no140_j24.b1 MSMg01no140_j24.b1 CHROMAT_FILE:
MSMg01no140_j24.b1 PHD_FILE: MSMg01no140_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:24 2005
(228 letters)
>mm_chr5_96771227_96771853
Length = 627
Score = 346 bits (179), Expect = e-100
Identities = 216/233 (92%), Gaps = 11/233 (4%)
Strand = Plus / Plus
Query: 1 aacataattttaantt--gcttcattttaatgattacgatgagcacacattctgggtgca 58
||||||||||||| | |||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 201 aacataattttaa--tgagcttcactttaacgattatgatgagcacacattctgggtgca 258
Query: 59 catatcttgattaataaataagtatcataaaaaggcagaaaaaaatcactttgtagccta 118
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 259 catatattgattaataaataagtatcataaaaaggcagaaaaaattcactttgtagccta 318
Query: 119 aagaactttataactggtcaaaggtacaccccacttctgatacaaatttt---gtttcac 175
||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 319 aagaactttataactggtcaaagatacaccccacttctgatacaaa----acagtttcac 374
Query: 176 cagacataattaaaagcatgcctatttccagaaacacataggcttcaaaagta 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagacataattaaaagcatgcctatttccagaaacacataggcttcaaaagta 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 627
Length adjustment: 9
Effective length of query: 219
Effective length of database: 618
Effective search space: 135342
Effective search space used: 135342
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no140_j24.g1 MSMg01no140_j24.g1 CHROMAT_FILE:
MSMg01no140_j24.g1 PHD_FILE: MSMg01no140_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:24 2005
(614 letters)
>mm_chr5_96940300_96941312
Length = 1013
Score = 1135 bits (587), Expect = 0.0
Identities = 605/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Minus
Query: 1 tatctgggctgaaatcccatagttgggaaaatgaaccctgaaaaacagtgtttcctctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tatctgggctgaaatcccatagttgggaaaatgaaccctgaaaaacagtgtttcctctgt 751
Query: 61 acagaccgagagtagtccatgttaaaaatttataattcatatttttgtgaatcattgggg 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 750 acagaccaagagtagtccatgttaaaaatttataattcatatttttgtgaatcattaggg 691
Query: 121 taaatacagagtttcttttaacagtcatcatttccacagaattttccaactttacatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 taaatacagagtttcttttaacagtcatcatttccacagaattttccaactttacatgtt 631
Query: 181 gaaaactgcacagagagaagacagagttcagaatattttgagtcaagctatctatacaaa 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 gaaaactgcacagaaagaagacagagttcagaatattttgagtcaagctatctatac-at 572
Query: 241 atcaccttctcatctatccctcacagaccccacctcttcctacaggtacaaatgagtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atcaccttctcatctatccctcacagaccccacctcttcctacaggtacaaatgagtgac 512
Query: 301 tctgagtttggagaggtgctacatcatcctttgcttcgagctctcagggaaggctggctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tctgagtttggagaggtgctacatcatcctttgcttcgagctctcagggaaggctggctt 452
Query: 361 gatggatcctaggctaactgtaatttcaacagcatgactcaaatgatggtggagtactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gatggatcctaggctaactgtaatttcaacagcatgactcaaatgatggtggagtactga 392
Query: 421 ctctataagccatcctagacctgtatttaatctcatccagtcaggtaccatacaccagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctctataagccatcctagacctgtatttaatctcatccagtcaggtaccatacaccagca 332
Query: 481 ggcaacacacacttggaggtaaatcgcccctggctctggccacactgattcagggctgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggcaacacacacttggaggtaaatcgcccctggctctggccacactgattcagggctgca 272
Query: 541 gtgcactcatcaagaactacactggatgcttgggagaattaccagctacttatcgccaat 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 271 gtgcactcatcaagaactacactggatgcttgggagaaataccagctacttatcgccaat 212
Query: 601 tcagaataccc 611
|||||||||||
Sbjct: 211 tcagaataccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
