BAC Information

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BAC

Clone NameMSMg01-140P23
Chromosome5 (Build37)
Map Location 15,196,259 - 15,196,493
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140P23.T7 (MSMg01no140_p23.b1)MSMg01-140P23.TJ (MSMg01no140_p23.g1)
ACCAG345988AG345989
length737712
length of high quality
(start - end)
243 (47 - 289)634 (76 - 709)
definitionCHROMAT_FILE: MSMg01no140_p23.b1 PHD_FILE: MSMg01no140_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:55 2005CHROMAT_FILE: MSMg01no140_p23.g1 PHD_FILE: MSMg01no140_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGAGGTTCTTCCTCTAGATCCAGAACAGGCACAAATGCTGTCT
ATTTATTAGATGCTCTTCTTGAAACTATGGATAATTAAAATATCAGTTCA
GTTAACTTGTGGAGAAAAATAACTCAGAACTTGGCTATAGATGTTATAAC
TTACTTTGAATGTATGTGTGCATGTGCATTGTGCCTGAGAGTATGGGTGA
GTGAGTGTTGCTGTGTGTGTGTGTGTGTGTGTGTATGTGAGCNCCAANCC
ACCCCCTTCTTTCTTTTTATTTTTTTTTTTTTTCCCCCCCTTTCTCCCCT
TCTCTCTCCCCTATTTTTTCTTTTCTCTCCGCCCTTTTCTTTCTTTTCTT
CTCTCTCTTTTCTTTTTTTCCTTCCCCACTTTTTTTCTCTTTCTTTTTCT
TTTTTTTTTTCCCCTCTTTTTTTCCTCTTTCCCTCTTTTTTTCTCTCTTC
TCTAGTCTCCTCTCTCTCCCCTTTCTTCTTACTTTCCCTCTTTTTTTTCT
TCTATATTTTACCCCCTTACCTCTCCCCTTTTATCTTCATTCCTCTCATT
ACTCACCCTCTCCCTCTTTTTTTTTTTCCTTACTCCTTTCTTCTTCTCCC
CCTCCCCCCCCCCTCTTCACTCCTCTTTTTCTTTCCCTTTCTCACCCCCT
TTTCCTCTCTCCCTTTACTTCCCCCCTTCTCCCCTCT
NCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTTAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
TACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGGGAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAACCGGTAAG
TAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATAGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAACCCAAAACCTAGGATACTCAAGATATAAGATACAATTTC
CTAAACACATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_p23.b1 MSMg01no140_p23.b1 CHROMAT_FILE:
MSMg01no140_p23.b1 PHD_FILE: MSMg01no140_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:55 2005
         (243 letters)



>mm_chr5_15196051_15196693
          Length = 643

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctagaggttcttcctctagatccagaacaggcacaaatgctgtctatttattagatgct 68
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctagaggttctttctctcgatccagaacaggcacaaatgctgtctatttattagatgct 268

                                                                       
Query: 69  cttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataact 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataact 328

                                                                       
Query: 129 cagaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgc 388

                                                                  
Query: 189 ctgagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtatgtg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 389 ctgagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)