Query= MSMg01no141_j24.b1 MSMg01no141_j24.b1 CHROMAT_FILE:
MSMg01no141_j24.b1 PHD_FILE: MSMg01no141_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:14 2005
(724 letters)
>mm_chr5_86153776_86154901
Length = 1126
Score = 1357 bits (702), Expect = 0.0
Identities = 720/726 (99%), Gaps = 2/726 (0%)
Strand = Plus / Plus
Query: 1 gaaaatattgtcctgagtgtggtaaccccttcataaaagacaacacatggtatgctctta 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gaaaatattgtcctgagtgtggtaacccaatcataaaagacaacacatggtatgctctta 260
Query: 61 ctgatgagtggatattagcccagaagttcagaattgctgagataaaattcacagaccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatgagtggatattagcccagaagttcagaattgctgagataaaattcacagaccaca 320
Query: 121 tgaagctctagcaaactcttgatggacataaacctatgtttcatgattcaaactcaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagctctagcaaactcttgatggacataaacctatgtttcatgattcaaactcaatca 380
Query: 181 gttgaaccatacaggcacccgtagataaggtcaaccatgatagcagctgaaggtacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgaaccatacaggcacccgtagataaggtcaaccatgatagcagctgaaggtacacag 440
Query: 241 gagggtgaagaagcatggacaaaagctacaactaaaagaatctgaagaagcatctgttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggtgaagaagcatggacaaaagctacaactaaaagaatctgaagaagcatctgttag 500
Query: 301 gcatggtggcttacgactttaatcccagcactcgggaggcagaggcaggcggatttctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatggtggcttacgactttaatcccagcactcgggaggcagaggcaggcggatttctga 560
Query: 361 gttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacagaaaaa 620
Query: 421 ccctgtctcggaaaaaaaagaaaaaagatacatccaagtcgagtgtaagactaggtttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctgtctcggaaaaaaaagaaaaaagatacatccaagtcgagtgtaagactaggtttct 680
Query: 481 gtattcaaatgattgcatggatatatttgcataaaccattcttttgggtcttctggtttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtattcaaatgattgcatggatatatttgcataaaccattcttttgggtcttctggtttt 740
Query: 541 aattacatactatttaaatatatttaattgtatataatatatattgagtaacttttcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattacatactatttaaatatatttaattgtatataatatatattgagtaacttttcata 800
Query: 601 aaacatactctgatactggttttccctttccccacacctcatagatttcccccccccc-a 659
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct: 801 aaacatactctgatactggttttccctttccccacacctcacagattcccccccccccca 860
Query: 660 cttccaccctagctccatgcattatctctctctcccttcggaaaacaaacaaaaaaa-ga 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 861 cttccaccctagctccatgcattatctctctctcccttcggaaaacaaacaaaaaaaaga 920
Query: 719 aaaaaa 724
||||||
Sbjct: 921 aaaaaa 926
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1126
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1116
Effective search space: 796824
Effective search space used: 796824
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_j24.g1 MSMg01no141_j24.g1 CHROMAT_FILE:
MSMg01no141_j24.g1 PHD_FILE: MSMg01no141_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:14 2005
(714 letters)
>mm_chr5_86266013_86267128
Length = 1116
Score = 1197 bits (619), Expect = 0.0
Identities = 662/677 (97%), Gaps = 2/677 (0%)
Strand = Plus / Minus
Query: 1 tttttatcatttctatgaaaaaggaaggcaaacctgagtcaagtttaaatgccagaatga 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 677 tttttatcatttctatgaaaaaggaaggcaaaagtgagtcaagtttaaatgccagaatga 618
Query: 61 aagggaagcttagtgaagagcgaggtaagctaagcacaatgaatatgcttagtgagtact 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 aagggaagcttagtgaagagcgaggtaagctaagcacaatgaatacgcttagtgagtact 558
Query: 121 ggagagatccattttctccaatgaacacacattcactgttaagtcagttttcatagtcat 180
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 557 ggagagatccattttctccaatgaacacacattcacagttaaatcagttttcatagtcat 498
Query: 181 tgtgacaaaagataagtggaaaagtcaaaagtctgtgggatctaatgaggtcacagaacc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 497 tgtgacaaaagataagtggaaaagtcaaaagtctgtgggatctaatgaggtcacagaatc 438
Query: 241 agtcctgaaggtaatgagtgagttgacacaattggaggataagatcctgtgtgcaggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtcctgaaggtaatgagtgagttgacacaattggaggataagatcctgtgtgcaggaag 378
Query: 301 tgatttgaatgaatgccgtatttcatagggaaactctccaggtgat--acatatgcatga 358
||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct: 377 tgatttgaaagaatgccgtatttcagaggcaaactctccaggtgatacacatatgcatga 318
Query: 359 aacctagagaatgtggggctgaagaacggaggagacagctgaagagacaaagtggagtag 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 317 aacctagagaatgtggggctgaagaacggaggagacagctgaagatacaaagtggagtag 258
Query: 419 ttaatggataggttggggaactgagcttccctatcaatgatcttctctatgaggaaaaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaatggataggttggggaactgagcttccctatcaatgatcttctctatgaggaaaaag 198
Query: 479 cagttgtaagctatcgtgtgggtgttgggaattgatctttggtcctctgcaagaccaaca 538
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caattgtaagctatcatgtgggtgttgggaattgatctttggtcctctgcaagaccaaca 138
Query: 539 aggacttttagtttatgagttatcattctagcttttccttgacttttgatgtagttacaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 137 aggacttttagtttatgagttatcattctagcttttccttgacttttgatgtagttataa 78
Query: 599 gccaatataacttttctatctgaacagaattataattggaaaatacttgatatgcttaac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gccaatataacttttctatctgaacagaattataattggaaaatacttgatatgcttaac 18
Query: 659 ttactaaccaccatagc 675
|||||||||||||||||
Sbjct: 17 ttactaaccaccatagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1116
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1106
Effective search space: 778624
Effective search space used: 778624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
