BAC Information

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BAC

Clone NameMSMg01-141K10
Chromosome5 (Build37)
Map Location 15,183,769 - 15,184,296
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K10.T7 (MSMg01no141_k10.b1)MSMg01-141K10.TJ (MSMg01no141_k10.g1)
ACCAG346470AG346471
length1,2761,265
length of high quality
(start - end)
524 (140 - 663)539 (139 - 677)
definitionCHROMAT_FILE: MSMg01no141_k10.b1 PHD_FILE: MSMg01no141_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:17 2005CHROMAT_FILE: MSMg01no141_k10.g1 PHD_FILE: MSMg01no141_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATCCTTNNNNCTCTCTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGG
AATTCTCTCTTAAAGAATTGGCCCCTTAAGACTGGCCCATGAACCTTTGT
GGGGCATTTTCTCCCCTTGAAGTGATAAGTCAACCCATAGCTCAACCTGG
GCACTTACATCCTGGGTGGCTGGGCCTGGATAAAAAACAAAAACAAAAAA
AAACCAAAAAACAAAAAAAAATTATCTGAGAACTATCCAACTAAGAGGAA
CCTCTCGCGGGGCTCTTTTTCAGTTCCTGCCACATAAATTCTTTCCTGTG
CCAATATGCTTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGAGGGCA
TCACTAAGAAATCTCAGCTCCATGAAAACACACCTAAGGTCACTAAGCCT
CAGCATCTTTTCTTCCCAGTTAAGCTGCCTTGAATAAAACTTTCTTACTC
CTCTCCTTTAGTCGTCAGAATGCGCTGGAGTTTTAGTCATAGCATCATGA
TAACAACCTTACAGAGAAAGAGAATTTTGAAATTATTTCTATTTTGTTCT
GCTGGTTTGGTTTGGTTTGGTTTGAGACAATGTCTCACACTATAACCTAA
GCTGGAGCTCATTGTACAGCTAAAGCCGACCTCAAACTGACAGCACTCTT
CACACCACAGCCTCCCAAGTGCTTAGATTATAGGTGTGAATCCATACCTG
GTGATCAATCTGTTTCATATTATTTGATTCTGTTTTAATCATTCTTTCAC
TGTTCAAAAAAATTCAACTCCTGATCATGCCATAATAAAATTGATCTTGC
TTAAAACAAAAATCCTAACCTCATTTAAAAATTGTTAATACGTAATCCCA
CTTAAAATTTTTAAACTTGAACTTATCTTTTTTTATCTGTTTTTATTCCT
CGTCACATTAACCTTAAATTTATTCTCTGTGCTTTTTTTTAAATATTTTT
CTCTAATTGTTGTCTCTCTTTTTTTTTTTTTTTTTTTCTTTCTATATATA
ATAATTTTTTTTATTAATTACCTCATAGTCTTTATATTATATTCCCCTCC
TTTATTCTTTTAATCCCCTTATCCTTTAATTATATTATTTTCTTCTCCTT
TTCTATTTAATTTACAGCTATTATCCTTTATTTTTTTTCCTTTCTTATGT
CCTAAATCTTATTTCCTATTTATTTATCCTAATTTATCCTATTACTGTCT
CATTTGATCTTCCTCTAATTCCTCTACNATTCTATACGTTCATTATATCT
TATTACTATTTCAAAACTCTCTAATA
NCATTCTTTTTNTAAACAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATGCTCNTCAAAGNCGTC
ACTAACAGAGTGTGGCTGTTGAGAACTAGTACTTACCTGTTGATTAAGAA
GTAAGAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTA
CAGCCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAACCTTGGA
ATTGACAGCTTTATATGCTCTACATTAAAATATAACTTTTACATTTGCTA
CATTTACATGACGATGAATAAACCCCAATGATTGCTTACTGCGTTATAAC
ACTGTTGTTAGTGTTAATCCACGTGACTGTCAGGATGTACACAGAGATGG
TCGTAACTTTTTTTCTTATTTTCAGCTATTTTTATAGACTGTCAAGACAA
CAGCCCTGATAGTATTATATTAGGACTGTCATGCTTTTAAATGTTAAAAA
ATGCTTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAGCTCATTGA
GATTATGTAAAGGGCTGCAATATATGTGCCACCACTAAATGGTGGTAAAC
TTCTTTCTGCGCAGCTGCGAGAGCACAGCCAGCCAAAGTCACCAGTCCAT
CTCTGGGGCTTTTGCCCAACCCCTGGGGGCTTTATCCTATCCCCAGGGTG
CATGAGGATCATGGGTGTTGCTACCAGTCCTAGTTTAGACACATCACCCA
AAGTATTTAAGCCTCACACTTTCTGAGCCTTTCTTTGTCTACCTCACCTA
TGTTAAAAAAGTAAAGTTTATCCACGTTATTATTCTGGTGTGCCCCTGGT
TNTATTCCTATGTTACGGTTAATAACATTCTTTATTTTGTTATTAATAAT
TTTCTATTCTTTTATTCTTTATTCTTTTTCTTTTCGTTATGTTCTTTATT
TCACTTTTACTCTTTTTCAATTATATCATTTTTTTTTTTTTTCTTCCACT
TTTTTTTTTTTGTTTTGTCTTTTTCTCATTTTTTTTTTTATTCTTATATT
TTTTATTCTATGTATATTATCTTCTTTTTTTTATGTTTCCTTGCCCTTTC
TTACTTTTTTTTTTTTCCTTACTTTCTCTAACTTTCTTCTTTTTCTCTTT
TCCCTCTACGCATCCTATTCTTTCTTTCCTGTTCTTTCTTATTTCTTCTC
TTATTTTCTCTATTCTCTTTACCATTTTTCCTTTTACTTCTTCTCTTTCT
CTATATCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k10.b1 MSMg01no141_k10.b1 CHROMAT_FILE:
MSMg01no141_k10.b1 PHD_FILE: MSMg01no141_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:17 2005
         (524 letters)



>mm_chr5_15183578_15184501
          Length = 924

 Score =  884 bits (457), Expect = 0.0
 Identities = 509/533 (95%), Gaps = 14/533 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcaacctgggcacttacatcctgggtggctgggcctggataaaaaaca------aaaa 54
           |||||| |||||||||||||||||||||||||||||||||||||||||||      ||||
Sbjct: 192 gctcaaactgggcacttacatcctgggtggctgggcctggataaaaaacaaaaaacaaaa 251

                                                                       
Query: 55  caaaaaaaaaccaaa--aaacaaa-aaaaaattatctgagaactatccaactaagaggaa 111
           |||||||||| ||||  ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 caaaaaaaaaacaaaacaaaaaaacaaaaaattatctgagaactatccaactaagaggaa 311

                                                                       
Query: 112 cctctcgcggggctctttttcagttcctgccacataaattctttcctgtgccaatatgct 171
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctctggcgggtctctttttcagttcctgccacataaattctttcctgtgccaatatgct 371

                                                                       
Query: 172 ttgggtcagtgtcttagcagaacaagagagacagagggcatcactaagaaatctcagctc 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgggtcagtgtcttagcagaacaagagagacagagggcatcactaagaaatctcagctc 431

                                                                       
Query: 232 catgaaaacacacctaaggtcactaagcctcagcatcttttcttcccagttaagctgcct 291
           ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||
Sbjct: 432 catgaaaacacacctaaggtcactaagcctcagcatctgctcttcccagataagctgcct 491

                                                                       
Query: 292 tgaataaaactttcttactcctctcctttagtcgtcagaatgcgctggagttttagtcat 351
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 492 tgaataaaactttcttactcctctcctttagtcgtcagaatgtgctggagttttagtcat 551

                                                                       
Query: 352 agcatcatgataacaaccttacagagaaagagaattttgaaattatttctattttgttct 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agcatcatgataacaaccttacagagaaagagaattttgaaattatttctattttgttct 611

                                                                       
Query: 412 gctggtttggtttggtttggtttgagacaatgtctcacactataacctaagctggagctc 471
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 612 gctggtttggtttggtttg-----agacaatgtctcacactataacctaagctggagctc 666

                                                                
Query: 472 attgtacagctaaagccgacctcaaactgacagcactcttcacaccacagcct 524
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 667 attgtacagctaaagccgacctcaaactgacagcaatcttcacaccacagcct 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)