Query= MSMg01no141_k20.b1 MSMg01no141_k20.b1 CHROMAT_FILE:
MSMg01no141_k20.b1 PHD_FILE: MSMg01no141_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:21 2005
(665 letters)
>mm_chr5_98755487_98756548
Length = 1062
Score = 1205 bits (623), Expect = 0.0
Identities = 654/669 (97%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 1 ttgtacgttcttttagggatgcttcattaaactgaccacgcaggcagaaaccgcgcggtc 60
||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 862 ttgtacgtt-ttttagggatgcttcattaaactgaccacgcagacagaaaccgcacggtc 804
Query: 61 agaaaagctctttggtgaaatgatcttgaaagcatagaaatttaaacaacttaaaggtat 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ag--aagctctttggtgaaatgatcttgaaagcatagaaatttaaacaacttaaaggtat 746
Query: 121 ttccaatcaaggactctaatgctgcccaaacacttttaacagagcagtgtctttgttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttccaatcaaggactctaatgctgcccaaacacttttaacagagcagtgtctttgttaat 686
Query: 181 agtgaaagaaatttataaatttagaccattctacacagaaaggttaaaattacagtaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtgaaagaaatttataaatttagaccattctacacagaaaggttaaaattacagtaagc 626
Query: 241 ccaacaacacaagtcttctagattttcactttgggttcagaa----tttttttagacctg 296
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 ccaacaacacaagtcttctagattttcactttgggttcagaaacac----tttagacctg 570
Query: 297 agcctgaaaaatgccaagaaggaatggcgaccatgaaatatgtaagattaagcaagtctc 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 569 agcctgaaaaatgccaagaaggaatggcaaccatgaaatatgtaagattaagcaagtctc 510
Query: 357 ttttctacggtgaggcctttgttatgacgaagaaatactttattttggaaaccataaatt 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttttctatggtgaggcctttgttatgacgaagaaatactttattttggaaaccataaatt 450
Query: 417 ccttcttcaagtctgggacttttaaacattgaatccaggaatttagcaccgatcccagaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccttcttcaagtctgggacttttaaacattgaatccaggaatttagcaccgatcccagaa 390
Query: 477 attctattctttgccaaaagatggggaatatatatttcacaacaaactgcagggtgtaag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attctattctttgccaaaagatggggaatatatatttcacaacaaactgcagggtgtaag 330
Query: 537 agagaagagacatatggaagaataagaaaatacatgccctattcagcttagctacagagt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agagaagagacatatggaagaataagaaaatacatgccctattcagcttagctacagagt 270
Query: 597 aaagaaggccatactataaagaaaagggcatagggaaaaccaaaccctagcatttctttg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaagaaggccatactataaagaaaagggcatagggaaaaccaaaccctagcatttctttg 210
Query: 657 aaacaaatg 665
|||||||||
Sbjct: 209 aaacaaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1062
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1052
Effective search space: 689060
Effective search space used: 689060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_k20.g1 MSMg01no141_k20.g1 CHROMAT_FILE:
MSMg01no141_k20.g1 PHD_FILE: MSMg01no141_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:21 2005
(711 letters)
>mm_chr5_98691808_98692918
Length = 1111
Score = 1234 bits (638), Expect = 0.0
Identities = 697/726 (96%), Gaps = 16/726 (2%)
Strand = Plus / Plus
Query: 1 tttctatatggaaagctccacaatgtcctttcccttgcatccgaaagaattaccaacttc 60
||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct: 187 tttctatatggaaagctccacaatgtcctttcctttgcatctgaaagaattagtaacttc 246
Query: 61 tgaagaacactatatctatttggagttttgtgagatggtagatataaagtccttaggaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaagaacactatatctatttggagttttgtgagatggtagatataaagtccttaggaca 306
Query: 121 gcagttggggccttgtgagtttttaagaaacagtgtgaattattaaatgcagtaagctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcagttggggccttgtgagtttttaagaaacagtgtgaattattaaatgcagtaagctaa 366
Query: 181 acataatgtaatgtagcaagccacctcaatctggaattaatgagaagcctttcttaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acataatgtaatgtagcaagccacctcaatctggaattaatgagaagcctttcttaaact 426
Query: 241 ctttcatcattaatttcaagagttataaaagcaatttatttcgtttctgtgttgttttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctttcatcattaatttcaagagttataaaagcaatttatttcgtttctgtgttgttttac 486
Query: 301 tccagtaatgactaacacagttttttttttttaagaaagctataactgaacaagtaaaag 360
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 487 tccagtaatgactaacacagtttttttttta-aagaaagttataactgaacaagtaaaag 545
Query: 361 tcacatttcactcatttctgtgggaaaaatcagacatcactcattttgttaaggataacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 546 tcacatttcactcatttctgtgggaaaaatcagacatcactcattttgttagggataacg 605
Query: 421 tttgatcactaaaaggtcacatccaggttggacaataatgacttttcattgttctgcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tttgatcactaaaaggtcacatccaggttggacaataatgacttttcattgttctgcttt 665
Query: 481 aaggctctgaagccctcaaagcctcagggtcctaaggtccgagacaaggaaagagatcac 540
|||||||| ||||| |||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 666 aaggctctaaagccttcaaagcctcagtgtcctaagatccgagacaagtaaagagatcac 725
Query: 541 ctcttaaaggtttgtctgaggaatg---------------gaaaatgttctcatctgcga 585
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 726 ctcttaaaggtttgtctgaggaatgaaaaattgtaaccctgaaaatgttctcatctgcgt 785
Query: 586 accagtgcatacaaaaatagatggaactcgggccagcgagaggataattgccacagaaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 accagtgcatacaaaaatagatggaactcgggccagcgagaggataattgccacagaaag 845
Query: 646 caaagtattataaatggatgccaattagaagggtcaagctgagaggttaggatacatgat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caaagtattataaatggatgccaattagaagggtcaagctgagaggttaggatacatgat 905
Query: 706 tcctcc 711
||||||
Sbjct: 906 tcctcc 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
