BAC Information

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BAC

Clone NameMSMg01-141M18
Chromosome5 (Build37)
Map Location 13,047,404 - 13,047,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845
Downstream geneLOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M18.T7 (MSMg01no141_m18.b1)MSMg01-141M18.TJ (MSMg01no141_m18.g1)
ACCAG346577AG346578
length1,2461,207
length of high quality
(start - end)		688 (85 - 772)600 (131 - 730)
definitionCHROMAT_FILE: MSMg01no141_m18.b1 PHD_FILE: MSMg01no141_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:37 2005CHROMAT_FILE: MSMg01no141_m18.g1 PHD_FILE: MSMg01no141_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTCTTNNNNATCATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCAAGCATCCTTACTTGGCCCTTTAATTTTACCTTTTTTGGGTCT
GTGCAGTGTATCATGCGTATTTTGAATATTTTGGCCAAGATCCACATATC
AGTGAGTACATACCATACATGTCCTTATGGGTCTGGGTAACCTCACTCAG
GACAATATTTTCTAATTTCATTGAAATTTATGATGTTCTTGTTTTTAGTA
GCTGAAGAGTATTTCATTGTGTAAATGGACCACATATTTCTGTATCCATT
CTTTAGATGAGGAACATCTGAGTTGCTTACAGTTTTTGGCTATTACAAAG
AAGGCCAATATGAGCATATGTCATTGGAATATCAAGAAACATCATTTGGG
CATATGCCCAGGAGTTGTATAGCTAGTTTGTCAGGTAAAAATATTTCTAT
TTTCTGAGAAACTGCCAGCCAGATTGATTTCTAGAGTGGTTTTACAAGTT
TGCAATCCAACCAAGAGTGAAGGAGTGTTCTCCTGTCTCCACACACTTGT
CCCTTGAATGTTTTATCTTAGTCATTCTGATTAGAATAAGTCATTATCTT
AGGGTCATTTTGATCTGTATTTCTCTGATGACTAAAGATATTGAACATTT
CTGTAATTACTTCTCATCCATTTGAGATTTCTTTTTTTTCCATTTTTTAT
TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCTCAT
AGCCACCCACCCCCACTCCCCTACCCACCCACTCCCCTTTTTTGGCCCTG
GCATTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCCAAGGGGCCTC
TCTTTTCAGTGATGGCCGCCTAAGCCATTTTTTGATACTTATGCACCTAG
AGTCCAGAGCTCCGGGCTAACGGGTAAATTCAAAAGGTTGTTCCATCCTA
TAGGGTTGCAAAACCCTTAAACTTTCTTGGGGAACTTTTCCTAAATTCCC
TCCCTGGGGGCACCTTTGTTTCCCTCTACATTAATCGAATGGGGAACATT
TCCTCTTTTTAATTTGTTTATTACTCCCCCTTTTTCCTGTCTAAAAAAAA
TTCTTTTATTCTGGTCTCCTTTTTTCAATACTCTTTTCCATGTAAACTAT
ATATTTTCTACTATCTTTTTAACTGTATATTTTGTTGTGTTTCTCCCCGC
TTCTATTCTCTTCATATCTATTTGTCTCTCTCCCTTTCTTTATTAT

NCCCTTTTTTTTTNTACCATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAGAACTTAGAGTAAAGGC
CTAGGTTATTGTCTTGCCCCTATACTCTTAATTAAATCACCAATTCAAAA
TGAACAAAGAGATCACAGGTTTTAGATACCTTATGGACCAAAAGGAAGAG
TTAAAATATTTTTTAATCCAAAACAACTTTTAAGTGCATCTTCTAGGTAT
ATTTTGGCATCTAAGGTTAAATTATATATAAAAGTGAAAATTTGTAAGAA
AAGAATGCTGCAAGGCAAGAAGGATTTGTGGAGTTAAGAGGAAAGGTCTC
TAGGCATTACAGCACATAATTGTAATCCCAGCACTTGGGAGGTTGGGAGG
CACAGACAAGGTTATCTTTGTGAGTTTGAGTCTGAACTGGACTACATAAT
ATGCTTCAAGACACTCAGGACTACATAGAGAGACCTAGTCAAGGGGGGCA
GACAGAGGGAGGAAGGGAGAGGGACAGGGACAGGGAGAGGAGAGATGATA
GACTTGAAGAGGAAGATTGAAAAGGAATAACAAAATAACTTTATTAGCTA
AGTGTGACAGGGAAATCACAGGTCTGGAACATTAGTAACTCTATAGTAGT
TCAGGGAGATTTTTTTTCTTTTTCTTTTTTTTAATGACATATTTATTTCA
TTTACATTTCCAATGGTATCCGAAAAGTCCCCCACACGCTCCCCTACCCA
CTCCCCCACCCTCCCATGCCCACTTCTTGGCCCTGGCGTTCTTCTGTACT
GAGGCAGATAAAGTTTTCCCAACCATTGGCCCTCTCTTTCCACTGAATGC
CTACTAGGCCACCTTCTGAAATTTATGTCGTTATAGAACTGAGCTTCCCG
GGTTACGGTTAATTTATATTGTGTTTCCCCTTAAGGGGTTGGAGTTCCCT
TAATTCCTTGGTTACTTTCTCTACTTCCTTCCTTTGTTTCTTTTGTTCAT
CCCATATTCTGATTTGTTACTCCACTTTTCCTGTTCTCGATTCCCCTTAT
TTTCACTATACACATCCTTTTTTTTCTTTTCTTTCTTTAATTATTTTCTC
TTTGTACTCATGGCTCTCTCTCTGTAATTTTTTCTTTTTTTTTTTTCCCC
TATTTACTTTTCTTTTTTATTCATCTTCTTTTATTCTTTTCTTTTTATTC
TCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m18.g1 MSMg01no141_m18.g1 CHROMAT_FILE:
MSMg01no141_m18.g1 PHD_FILE: MSMg01no141_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:37 2005
         (600 letters)



>mm_chr5_13046857_13047856
          Length = 1000

 Score =  650 bits (336), Expect = 0.0
 Identities = 430/468 (91%), Gaps = 19/468 (4%)
 Strand = Plus / Minus

                                                                        
Query: 135  ggttaaattatatataa-aagtg-aaaatttgtaagaaaagaatgctgcaaggcaagaag 192
            |||||||||||| |||| || || |||||||||||| |||||||||||||||||||||||
Sbjct: 1000 ggttaaattatacataagaa-tgaaaaatttgtaagcaaagaatgctgcaaggcaagaag 942

                                                                        
Query: 193  gatttgtggagttaagaggaaaggtctctaggcattacagcacataattgtaatcccagc 252
            ||||| |||||||||| |||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 941  gatttatggagttaagcggaaaggtctctaggcattacagcacatacctgtaatcccagc 882

                                                                        
Query: 253  acttgggaggttgggaggcacagacaaggttatctttgtgagtttgagtctgaactggac 312
            ||||||||||||||||||||||||||||| |||||||||||     | |||| |||||||
Sbjct: 881  acttgggaggttgggaggcacagacaagggtatctttgtga-----a-tctggactggac 828

                                                                        
Query: 313  tacataatatgcttcaagacactcaggactacatagagagacctagtcaaggggggcaga 372
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tacataatatgcttcaagacagtcaggactacatagagagacctagtcaaggggggcaga 768

                                                                        
Query: 373  cagagggaggaagggagagggacagggacagggagaggagagatgatagacttgaagagg 432
            |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct: 767  cagagggaggaagggagagggacaggaacagggagaggagagaggagagacttgaagagg 708

                                                                        
Query: 433  aagattgaaaaggaataacaaaataactttattagctaagtgtgacagggaaatcacagg 492
            | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 707  aggatagaaaaggaataacaaaataactttattagctaagtgtgacagggaaatcatagg 648

                                                                        
Query: 493  tctggaacattagtaactctatagtagttcagggaga--ttttttttctttttctttttt 550
            |||||||||||||||||||||||||||||||||||||  ||||    || |  |||||||
Sbjct: 647  tctggaacattagtaactctatagtagttcagggagaaatttt----ctat--ctttttt 594

                                                            
Query: 551  ttaatgacatatttatttcatttacatttccaatggtatccgaaaagt 598
            |  |||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct: 593  t--atgagatatttatttcatttacatttccaatgctatctgaaaagt 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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