Query= MSMg01no142_a07.b1 MSMg01no142_a07.b1 CHROMAT_FILE:
MSMg01no142_a07.b1 PHD_FILE: MSMg01no142_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:07 2005
(711 letters)
>mm_chr5_48821026_48822132
Length = 1107
Score = 1154 bits (597), Expect = 0.0
Identities = 662/685 (96%), Gaps = 4/685 (0%)
Strand = Plus / Plus
Query: 27 tatccggacctggggctgcagggacaaaccagcaggcaggtccatacctgccaagaggca 86
|||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 227 tatctggacctggggctgcagggacaaatcagcaggcagatccatacctgccaagaggct 286
Query: 87 tccttcagcctatttcattcttgcatattggacacatacacaaaaagatctaagaaacta 146
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 287 tccttcagcctatttcattcttgcatattgaacacatacacacaaagatctaagaaacta 346
Query: 147 atatcattctgaaatttactgggcagaagactgtgggaaagctaactttttatgtctaca 206
|| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct: 347 at---attctgaaacttactgggcagaagactgtggaaaagctagctttttatgtctgca 403
Query: 207 tatgcatgtgctcatttgtgagacaatacatgtcaaatgtgcatacatgtgtgttgggtg 266
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 404 tatgcatgtgctcatttgtgagacaatacatggcaaatgtgcatacatgtgtgttgggtg 463
Query: 267 cacatgtattcctgtgtttctttagtctctcttctcttattaccagctgcaagctgtggt 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 cacatgtattcctgtgtttctttagtctctcttctcttattaccagctgcaagctggggt 523
Query: 327 ttcctggagcagccctgggactctgaagattggctgtatgtcaaattcgtgtttatcctg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttcctggagcagccctgggactctgaagattggctgtatgtcaaattcgtgtttatcctg 583
Query: 387 atgcatacattctgcctattgtaatgacttgagaaacttttattttcatttgctttctcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgcatacattctgcctattgtaatgacttgagaaacttttattttcatttgctttctcc 643
Query: 447 tggtggttcttcatcattctgaaaagaacaatttgcaagagggtcagaagattgcattac 506
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 644 tggtggttcttcatgattctgaaga-aacaatttgcaagagggtcagaagattgcattac 702
Query: 507 aaagaaagtcattctgcaggtatgttaccgtgtcctggctccagatgagagtgctacatg 566
||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 703 aaagaaagtcattctgcaggtatgttattgtgccctgcctccagatgagagtgctacatg 762
Query: 567 atgccaggcctagttaatttcagctatcagcaacagaactcttcacagggctctctgcag 626
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 763 atgccaggcctagttaatttcagccatcagcaacagaactcttcacagggctctctgcag 822
Query: 627 ctcaggtgacagttgccctggaacattctttatggtttaatgtcatgttgaggcacaagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctcaggtgacagttgccctggaacattctttatggtttaatgtcatgttgaggcacaagg 882
Query: 687 gggcagtagtgccctctatgttaac 711
|||||||||||||||||||||||||
Sbjct: 883 gggcagtagtgccctctatgttaac 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1107
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1097
Effective search space: 768997
Effective search space used: 768997
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_a07.g1 MSMg01no142_a07.g1 CHROMAT_FILE:
MSMg01no142_a07.g1 PHD_FILE: MSMg01no142_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:08 2005
(630 letters)
>mm_chr5_48902131_48903156
Length = 1026
Score = 1145 bits (592), Expect = 0.0
Identities = 619/630 (98%), Gaps = 4/630 (0%)
Strand = Plus / Minus
Query: 1 agaggaactcaagcagccagaaaacatcttcaatttctgtcaaaaattcacagtctggct 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 826 agaggaactcaagcagccagaaaacatcttgaatttctgtcaaaaattcagagtctggct 767
Query: 61 agttgtcaagaaattaagtctgaagctaaggagctgtgatagaaggtcccttagggtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agttgtcaagaaattaagtctgaagctaaggagctgtgatagaaggtcccttagggtctt 707
Query: 121 ctgtgtctgctatagaaagctggcaggacattgttcctcattttctttatctcttatcta 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctgtgtctgctacagaaagctggcaggacattgttcctcattttctttatctcttatcta 647
Query: 181 tgacagggtgtggtgactttcggaaaaatgttgggctgctggagcactagggcagggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgacagggtgtggtgactttcggaaaaatgttgggctgctggagcactagggcagggaga 587
Query: 241 gcaaacaagggagaagtctttctccataggccaggtagagacaggaaggaacagtttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcaaacaagggagaagtctttctccataggccaggtagagacaggaaggaacagtttgcc 527
Query: 301 aaagggatgtacttgaactgtatcaaaggcagactgggaatatagatgttgactattggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaagggatgtacttgaactgtatcaaaggcagactgggaatatagatgttgactattggt 467
Query: 361 gaagggtgattacaaagaaggatggagcacataccttaccatggcagtaaggaaagagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaagggtgattacaaagaaggatggagcacataccttaccatggcagtaaggaaagagca 407
Query: 421 aagacagagagacagcttaccgcctgagcaagctaatgtctccgagtttccagaggaggg 480
|||||||||||||||||| | ||||||||||||||||| || |||||||||||||||
Sbjct: 406 aagacagagagacagcttgctgcctgagcaagctaatgcct----gtttccagaggaggg 351
Query: 481 ggtgcctgggtgaaaaagttcttccagaaatggaggaggaggaagaaaatagacatacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtgcctgggtgaaaaagttcttccagaaatggaggaggaggaagaaaatagacatacac 291
Query: 541 actatataaatcagacttaaaatgtaaattgctcttggtctttatatgcccagtgtcaat 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 actatataaatcagacttaaaacgtaaattgctcttggtctttatatgcccagtgtcaat 231
Query: 601 ttattaaccttttattctgtgccacatcct 630
||||||||||||||||||||||||||||||
Sbjct: 230 ttattaaccttttattctgtgccacatcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1026
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1016
Effective search space: 629920
Effective search space used: 629920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
