BAC Information

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BAC

Clone NameMSMg01-142D15
Chromosome5 (Build37)
Map Location 117,224,720 - 117,365,235
singlet/doubletdoublet
Overlap geneGm1684
Upstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142D15.T7 (MSMg01no142_d15.b1)MSMg01-142D15.TJ (MSMg01no142_d15.g1)
ACCAG346892AG346893
length1,2531,262
length of high quality
(start - end)
677 (87 - 763)280 (131 - 410)
definitionCHROMAT_FILE: MSMg01no142_d15.b1 PHD_FILE: MSMg01no142_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:38 2005CHROMAT_FILE: MSMg01no142_d15.g1 PHD_FILE: MSMg01no142_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,224,720 - 117,225,396)(117,364,956 - 117,365,235)
sequence
CTTTCCTTNNNCACCATTCGCGCTAAGACTCCTATGGGAGAGGATCCGCG
GAATTCTCAGAGTCTCACACAGCCCTTTAAGTCTCCTCAAACAATCTCAT
TTGATTTTCTTATCCCTTTTATGTGTGCATTTGCCCGCCTGCCTGAGTTT
ATGTGTAGTGCATGCATGGAGACACTCATGGAGATCAGAGCGTGTCACAC
CCCTTTGTAATTTTTAATTTATAGCTGGATGTTTTGGGAATCTTAAGCAT
TTATTAAAGTATTCAAGCTATACCATTAAAAATATGAGGAAGCCATGTTC
AGGGAGAAAGGAATCTGAATGTATGTCTTTGGAAAGGAGCTTATGTGTCT
GAGGTACCAGATATGTAAGCCCAATGAGTAGAAAGTCAAATGGAAAATGA
CCCCTGTACCCCAAATGGCCAAAAGTCCCAAAGACACCCTCCACAAAATA
ACTAAAGGGGCTGTGGAGATTGCTCAGTGAGTAAGTATATTTGCCCTACA
AGCATGTGGGCTTGAGTCTGAATCTCCAGCACCCACCTAAAACTATGGGC
ACAGCTTCATGTAACCCCTGTGATATTGGGTTAAAACATGGTAGATCCTT
TGGGCTTGCTGGCTGCCAGCCTAGCTCCAAGTTCAGTGAGAGACCCTGTC
TCAATAGAAAAAGGCAGAGAAAGATGGAACACAGTCAATGATCTCTTCAA
TCCTCTGGGAACTTGAACACATGTGTAGACATCACACATCACATATACAC
TCATATATGAATACAAAATACATACTTACCTAAAAATTTAAAATATGTAC
AAATGGATAGAGAGAGAAGGTTCCACAGTTAAGAGTACTTCCTGTTCTGG
CAGAGTGCCTGGATTTGTTAACAGCATTCCCCAGTGTCTCCTAACCCTTC
CTTGACTCTGCTTCTAAAGGTTTGGTGCCCCCTCTGGTCCTCCTTTGGCA
CCAATCTTGTACTTGGTGCCCAATAATTTCCTAATAACTAAAACCTTTCT
ATGTTATCTAACTTTCTAACTTTTCTATCTCATTATTTTATTATTTTTTG
GCTCTTTACCAATCCTCTCCCTAAAAAAATATTTGGTGGTTCTAATTTTT
TCTCTAAATATTATTTCTTTATAACCGTATATAAATCCCTTTTGTGTTCT
CCTTCATATTCTCTTTTTATTCTCTTTCANCTTCCTATTGTTTTTTCTTC
TAATAATAATACAAGTAAATGTTCTTCTCAATCTATTCGCTGTTTAATAT
AAN
CCCGCTTTTNTTNNAATCATGTGAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGGTCTACCATAGGAC
CCGGGNTTTTGTCCCTAGAACCCTTAAACATACACGTACACCCTTAAAAT
CATTTTCCGAATCAAAGCATTGGCTCTGATTGTTTGTTTTCTGGTTAATA
ATAGGCCCAGAAGAGTCATAGCCACACTGAGGATCGCGAGGATCTCGGAA
GAGGTGCCAGAGAAGGAGACCACGCGGAAAGGGCGCTCTCCAGGGTCCTG
AAACCCCATCTCAGTCTGCGCTCTAAAGGGCGGTCTGAGACACCTGGGTG
AGCTTTAGGACAAATAGAGGGCTTGTGTTCCCTGAGTACCATGACCTTCC
AATTGAGAAAATTATAAATGAGACTCAATATTAATAGTTCTTACCAACTG
CTGGGTGATTACAGAGTTGAAAAGGTGCAGGAGGCCTTCGCGACAGAATT
GCTATGTGGAGAAGCAAAAATGATGGGAAAGGAAAGGGCTGTGGGCTGAG
CGGAGTAGCGGCTTGAATTAAGCAAGGTTGCCATTTGAGAGCAGGGACCA
CATATTCTCTGTTATCAGGTGAATTGAGCCCTTCGGTTGATCAAAATGCC
CCCTAGGTTCACAGTGGGGAAGTTCATCCTCAGAGCCGAGGTGGATGACC
TTGGCAGGGGCAATGGCAGCTGGAGGGATCGTTGCATTGTTATTGTCTCT
TATCCTCCCTGTCTGCTGTGGCTTGAGTATACAACTAGAACCCCTCGTGG
CCTCAGGGCCCATTCTGTGCATCTATCCCTGTTTTCTGTGGAAGGATGTG
TGATGTTAGGAAAACATGGACCTGCAAGTTGGACTCCCCTCTGGAGTTTA
CCGCAAGGATCCCGGGTAAATGGTTTGTTCCTGCATCTGGTTTAGGGAAA
GGCTTTTTTTGTTGTCGTTTCCCAGGGGTTTGTCCAAAATACTTTTTTTA
TCCCACGTTTTATCACTTTTCTTCTCTCCACCCCATTTTTTACTTTTATT
ATACCCCTTTTTTATACCATGGTTGCTACAATACCTTTTTATTTCTCGCC
TTCATCATAAAACACTGTGGCTTTCTCTTCTTTCCTTTCTCTTTTAAAAG
CATAATAAAATATTATTTCTCTTTTTTGCTTTATCTTAATTTTTCCATCC
TTATATCTTAATAAATACACTTTTCTTTAATCTTGTTTTTCTTTCATCAT
AAGATATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_d15.b1 MSMg01no142_d15.b1 CHROMAT_FILE:
MSMg01no142_d15.b1 PHD_FILE: MSMg01no142_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:38 2005
         (677 letters)



>mm_chr5_117224520_117225596
          Length = 1077

 Score = 1216 bits (629), Expect = 0.0
 Identities = 665/677 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaacaatctcatttgattttcttatcccttttatgtgtgcatttgcccgcctgcctga 60
           |||||||||||||||||||||||||||   |||||||||||||||||   ||||||||||
Sbjct: 201 tcaaacaatctcatttgattttcttatttattttatgtgtgcatttgtatgcctgcctga 260

                                                                       
Query: 61  gtttatgtgtagtgcatgcatggagacactcatggagatcagagcgtgtcacaccccttt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtttatgtgtagtgcatgcatggagacactcgtggagatcagagcgtgtcacaccccttt 320

                                                                       
Query: 121 gtaatttttaatttatagctggatgttttgggaatcttaagcatttattaaagtattcaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 321 gtaatttttaatttatagctggatgttttgggaatcttaagcatctattaaagtactcaa 380

                                                                       
Query: 181 gctataccattaaaaatatgaggaagccatgttcagggagaaaggaatctgaatgtatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctataccattaaaaatatgaggaagccatgttcagggagaaaggaatctgaatgtatgt 440

                                                                       
Query: 241 ctttggaaaggagcttatgtgtctgaggtaccagatatgtaagcccaatgagtagaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggaaaggagcttatgtgtctgaggtaccagatatgtaagcccaatgagtagaaagt 500

                                                                       
Query: 301 caaatggaaaatgacccctgtaccccaaatggccaaaagtcccaaagacaccctccacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatggaaaatgacccctgtaccccaaatggccaaaagtcccaaagacaccctccacaa 560

                                                                       
Query: 361 aataactaaaggggctgtggagattgctcagtgagtaagtatatttgccctacaagcatg 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 aataactaaaggggctgtggagatggctcagtgagtaagtatatttgccctacaagcatg 620

                                                                       
Query: 421 tgggcttgagtctgaatctccagcacccacctaaaactatgggcacagcttcatgtaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggcttgagtctgaatctccagcacccacctaaaactatgggcacagcttcatgtaacc 680

                                                                       
Query: 481 cctgtgatattgggttaaaacatggtagatcctttgggcttgctggctgccagcctagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgtgatattgggttaaaacatggtagatcctttgggcttgctggctgccagcctagct 740

                                                                       
Query: 541 ccaagttcagtgagagaccctgtctcaatagaaaaaggcagagaaagatggaacacagtc 600
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 ccaagttcagtgagagaccatgtctcaatagaaaaaggcagagagagatggaacacagtc 800

                                                                       
Query: 601 aatgatctcttcaatcctctgggaacttgaacacatgtgtagacatcacacatcacatat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatgatctcttcaatcctctgggaacttgaacacatgtgtagacatcacacatcacatat 860

                            
Query: 661 acactcatatatgaata 677
           |||||||||||||||||
Sbjct: 861 acactcatatatgaata 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no142_d15.g1 MSMg01no142_d15.g1 CHROMAT_FILE:
MSMg01no142_d15.g1 PHD_FILE: MSMg01no142_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:38 2005
         (280 letters)



>mm_chr5_117364756_117365435
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacacgtacacccttaaaatcattttccgaatcaaagcattggctctgattgtttgtttt 60
           |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tacacgtacacatttaaaatcgttttccgaatcaaagcattggctctgattgtttgtttt 421

                                                                       
Query: 61  ctggttaataataggcccagaagagtcatagccacactgaggatcgcgaggatctcggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctggttaataataggcccagaagagtcatagccacactgaggatcgcgaggatctcggaa 361

                                                                       
Query: 121 gaggtgccagagaaggagaccacgcggaaagggcgctctccagggtcctgaaaccccatc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaggtgccagagaaggagacctcgcggaaagggcgctctccagggtcctgaaaccccatc 301

                                                                       
Query: 181 tcagtctgcgctctaaagggcggtctgagacacctgggtgagctttaggacaaatagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcagtctgcgctctaaagggcggtctgagacacctgggtgagctttaggacaaatagagg 241

                                                   
Query: 241 gcttgtgttccctgagtaccatgaccttccaattgagaaa 280
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 240 gcttgtgttccctgagtaccatggccttccaattgagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)