Query= MSMg01no142_o22.b1 MSMg01no142_o22.b1 CHROMAT_FILE:
MSMg01no142_o22.b1 PHD_FILE: MSMg01no142_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:14 2005
(621 letters)
>mm_chr5_24909921_24910941
Length = 1021
Score = 1183 bits (612), Expect = 0.0
Identities = 618/620 (99%)
Strand = Plus / Minus
Query: 2 ttttctttttatgtaaggacagtaaatagaatagtatttaaataaaacaactaagggact 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttttctttttatgtaaggacagtaaatagaatagtatttaaataaaacaactaagggact 734
Query: 62 tttgcttgtggaagaagtaattactaatttacaaacatctgtgtacgtcagaatcaccag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tttgcttgtggaagaagtaattactaatttacaaacatctgtgtacgtcagaatcaccag 674
Query: 122 aaggcttgttaaagcaaagattactgggctgcactacaagaaatgttgatttagtgggtc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaggcttgttaaagcaaagattactgggctgcactacaagaaatgttgatttagtgggtc 614
Query: 182 ttaattatgccctgtaattttgcattcccgagaggttcccaattagctagtctcaccccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttaattatgccctgtaattttgcattcccgagaggttcccaattagctagtctcaccccc 554
Query: 242 aagtcacagtaagggtcagttggagaaaggctactttattgtaatcacatgaggatacat 301
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 553 aagtcacagtaagggtcagttggagaaaggctactttaatggaatcacatgaggatacat 494
Query: 302 tgtatttttgcacatctttgttttttgagataattattcttctgtagtccccattagcct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtatttttgcacatctttgttttttgagataattattcttctgtagtccccattagcct 434
Query: 362 tgaactcataactatagcactggtagactttgaatggaacctcctacttcagcttcctga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaactcataactatagcactggtagactttgaatggaacctcctacttcagcttcctga 374
Query: 422 gcactgagattagaatcatgaaccactcccaccaagttgcattaatacctttagtgttta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcactgagattagaatcatgaaccactcccaccaagttgcattaatacctttagtgttta 314
Query: 482 ttaaattgttcattttcttacttttaggcacttgctgggctcatcatcgatgtgtagagt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttaaattgttcattttcttacttttaggcacttgctgggctcatcatcgatgtgtagagt 254
Query: 542 ggtcactgggaatatgccaaatggaagaaccattattagtaaacgtggacaaagctgttg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtcactgggaatatgccaaatggaagaaccattattagtaaacgtggacaaagctgttg 194
Query: 602 tctcagggagcacagaagta 621
||||||||||||||||||||
Sbjct: 193 tctcagggagcacagaagta 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_o22.g1 MSMg01no142_o22.g1 CHROMAT_FILE:
MSMg01no142_o22.g1 PHD_FILE: MSMg01no142_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:14 2005
(695 letters)
>mm_chr5_24797247_24798339
Length = 1093
Score = 1311 bits (678), Expect = 0.0
Identities = 690/695 (99%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 1 gtgaacttccatgtcgttacagaaacatctatcctgttgctgctgtgtactgtgacaagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gtgaacttccatgtcgttacagaaacatctatcctgttgctgctgtgtacagtgacaagt 260
Query: 61 ttctccattaataaattaagagacttagattaaatggacatctcagaacagagggagtta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccccattaataaattaagagacttagattaaatggacatctcagaacagagggagtta 320
Query: 121 ccatattttccacaaaggaataaaattctaaagaagttcatacatactattaactagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatattttccacaaaggaataaaattctaaagaagttcatacatactattaactagttg 380
Query: 181 gatagcaaatatatctaataagggaagctgattctcccagtaagattcttgagggcaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagcaaatatatctaataagggaagctgattctcccagtaagattcttgagggcaaag 440
Query: 241 aactaatagaaatcagtggtgagcttcctgtagcttagagctattcttgtccatgatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactaatagaaatcagtggtgagcttcctgtagcttagagctattcttgtccatgatacc 500
Query: 301 tctggtatctatgatggctgatctctcattttcgatgtctgtaagtatcaataaatccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctggtatctatgatggctgatctctcattttcgatgtctgtaagtatcaataaatccaa 560
Query: 361 gaaatcacacaaagagtttagaaaataaaacctctgaaatattttatgtagacattttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatcacacaaagagtttagaaaataaaacctctgaaatattttatgtagacattttcc 620
Query: 421 cataaccattaatgtctatttgattattatgatatatatatactgcttaaattatataag 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 cataaccattaatgtctatttgattattatgatatatata--ctgcttaaattatataag 678
Query: 481 gctttaaaaattcacaaactaatttcacttcaatagtaacaatgcattggacagttaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctttaaaaattcacaaactaatttcacttcaatagtaacaatgcattggacagttaata 738
Query: 541 ttcaagagcactttataccttanatgcctttaaatactattgtcaaattctaagcacatt 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttcaagagcactttataccttaaatgcctttaaatactattgtcaaattctaagcacatt 798
Query: 601 tttaaaagaatcaacctctagagctccctggtactaaatcaccaaccaaagaaaacacat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tttaaaagaatcaacctctagagctccctggtactaaatcaccaaccaaagaaaacacat 858
Query: 661 ggtaggatttgtggctctagctgcatatgtagcag 695
|||||||||||||||||||||||||||||||||||
Sbjct: 859 ggtaggatttgtggctctagctgcatatgtagcag 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1093
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1083
Effective search space: 741855
Effective search space used: 741855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
