BAC Information

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BAC

Clone NameMSMg01-143H07
Chromosome5 (Build37)
Map Location 107,006,309 - 107,006,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892
Downstream geneLOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143H07.T7 (MSMg01no143_h07.b1)MSMg01-143H07.TJ (MSMg01no143_h07.g1)
ACCAG347797AG347798
length756700
length of high quality
(start - end)
---539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no143_h07.b1 PHD_FILE: MSMg01no143_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:01 2005CHROMAT_FILE: MSMg01no143_h07.g1 PHD_FILE: MSMg01no143_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCNNNNNGGGNGGGGGGGGGGGGGGCCGCGNTCCCCCTACCTGC
TGCGNCGCTTTATAATTGCGGCGCNAAACGACTCAAATTCTGAANNGANN
NGNGGAANNNGGTTTACTAAAGAAGGGGGAGNNNAGAGNGGNNNNNNNNN
ANAGGAGGGGGGAGGGGGAACCCCAGNAANCNNNGAAAGGAAAGGAGGAA
AGGAAGAGAAGAAANGAGGGGAGANNNAAAGGNAGAAAAGAGAGGGGGAG
GGAGAGAAANAGGGAAGGNNANAAANNAANAGGGAANGNNAAAAGAGNGA
TTTTGTTAGGATTGGAGGGNTATTNATTGTTGNTAAGAAAAGTTGGATGG
ANNTGAAGNAGNAGTTTTTTATGTTTTAACAAGAAANCNCNCGAANAGNC
ACACACGGAAGACCCGACCCCCCCCGGACAGAAGGGAGGAACCAACGGCA
AACCAGAAGCCAAGAGGACACCCCAAAAAGAAAGAGCAGGACCGCAGCAC
AGAAGAAAGCACCACAAAGGNCGGAGGAAGCGCAACCAGAAGGAAAGACA
AGGCGACAGGGAGGAAAAAGAGCCCAGAGCAGCAGAGAAGAGGCACACCC
AAGAACACAAGGCGAAAAACAAAGAAAAGGAAAGAGGACGAGGAGAAGCA
CGGACGGAAGGGGGCGGCGAAGGGAGAGGGGAAAGGAGGGGGAAGGGGCA
GTTTTTTTTTTGAGGGAGAGAGAAGACGAAGAAAATACTTATGGTGAGAT
AGTGTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTTAATATGTTGACACACTTAACAA
TGCAGGGTCATGCTGCACAGTACGCTTCGCCGGTTTGGTTCAGTACACCC
CCTGACAGGGCCTAATCATCCTGTGCCCTAAAGGCAGGGGGAAGGAGAGG
ATTTTAATTACTGCTCTGTATGCAAGTTTGCCAGCATTAAATTGAGACAT
AATTAGGCCTCTGAATTTTAATAATTGTCCTAGCTAATTGGGCAGACAAG
TACGTTATGCGGCATGCCGTGATTAGATAATTAGTATTTCCAAATGACAA
AATTGGGCTCTTGATTACAAATTCTACATGAAGGGGGAAGGTACTGAGCA
GATCTTTACAACCCCATTAAGGGAGAGTTTAGCAATGGTGGTAATTTAGT
GCTCATCAGGAAGCCGAGTCTCATTCTCAGAGCTGGGTATCTGGGACAAG
GGCCTCTGGCCCATGCTGTCTTCCACTGTGGCTCCTGCCCAGAATGCTCT
GCTTTGCGTCCTATAGGCTCTTCCTCTCCCCAGCATAGTAGCTGTTACTG
ACCTTGGCTAAAGCGCTGTGGGCGTATAGCAGGTGATAACTCTGAATAAG
ATATCCTAGAACTGGGAAAGAAAGGAGAGGAGACATTCCCAGGACATATC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_h07.g1 MSMg01no143_h07.g1 CHROMAT_FILE:
MSMg01no143_h07.g1 PHD_FILE: MSMg01no143_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:01 2005
         (539 letters)



>mm_chr5_107006109_107007047
          Length = 939

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttaatatgttgacacacttaacaatgcagggtcatgctgcacagtacgcttcgccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aggttaatatgttgacacacttaacaatgcagggtcatgctgcacagtacgcttcgccgg 679

                                                                       
Query: 61  tttggttcagtacaccccctgacagggcctaatcatcctgtgccctaaaggcagggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttggttcagtacaccccctgacagggcctaatcatcctgtgccctaaaggcagggggaa 619

                                                                       
Query: 121 ggagaggattttaattactgctctgtatgcaagtttgccagcattaaattgagacataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggagaggattttaattactgctctgtatgcaagtttgccagcattaaattgagacataat 559

                                                                       
Query: 181 taggcctctgaattttaataattgtcctagctaattgggcagacaagtacgttatgcggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taggcctctgaattttaataattgtcctagctaattgggcagacaagtacgttatgcggc 499

                                                                       
Query: 241 atgccgtgattagataattagtatttccaaatgacaaaattgggctcttgattacaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atgccgtgattagataattagtatttccaaatgacaaaattgggctcttgattacaaatt 439

                                                                       
Query: 301 ctacatgaagggggaaggtactgagcagatctttacaaccccattaagggagagtttagc 360
           ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 438 ctacatgaagggggaaggtactgagcagatctttacaagtctattaagggagagtttagc 379

                                                                       
Query: 361 aatggtggtaatttagtgctcatcaggaagccgagtctcattctcagagctgggtatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatggtggtaatttagtgctcatcaggaagccgagtctcattctcagagctgggtatctg 319

                                                                       
Query: 421 ggacaagggcctctggcccatgctgtcttccactgtggctcctgcccagaatgctctgct 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 318 ggacaagggcctctggcccatgctgccttccactgtggctcctgcccagaatgctctgct 259

                                                                     
Query: 481 ttgcgtcctataggctcttcctctccccagcatagtagctgttactgaccttggctaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttgcgtcctataggctcttcctctccccagcatagtagctgttactgaccttggctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)