Query= MSMg01no143_i07.b1 MSMg01no143_i07.b1 CHROMAT_FILE:
MSMg01no143_i07.b1 PHD_FILE: MSMg01no143_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:06 2005
(249 letters)
>mm_chr5_10282581_10283229
Length = 649
Score = 422 bits (218), Expect = e-122
Identities = 234/242 (96%), Gaps = 6/242 (2%)
Strand = Plus / Plus
Query: 7 gaattcaaattattatcactattgtacaacctagatttgaagttgatttacttggtagtc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaattattatcactattgtacaacctagatttgaagttgatttacttggtagtc 266
Query: 67 attgtatgtcaaatcatatgaaactgaaagcaaaattggtacaaaaatgaacattagttg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attgtatgtcaaatcatatgaaactgaaagcaaaattggtacaaaaatgaacattagttg 326
Query: 127 aaattttatattctagttgtagtaagccagcccacagcctatgtgaaccgggtatttctg 186
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaattttatattgtagttgtagtaagccagcccacagcctatgtgaaccgggtatttctg 386
Query: 187 gaaggcaggctggggctgaaagagagagagactagacagcgggggtggggg--gggcggg 244
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct: 387 gaaggcaggctggggctgaaagagaga----ctagacagcgggggtgggggtggggtggg 442
Query: 245 gg 246
||
Sbjct: 443 gg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no143_i07.g1 MSMg01no143_i07.g1 CHROMAT_FILE:
MSMg01no143_i07.g1 PHD_FILE: MSMg01no143_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:06 2005
(342 letters)
>mm_chr5_10387722_10388464
Length = 743
Score = 569 bits (294), Expect = e-166
Identities = 330/342 (96%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 1 tcattgtcatagagaatttactggcattaggtagtgaggtggtgaacagagtgaataggt 60
|||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||
Sbjct: 743 tcattgtcatagagaatttactgggattagatagtgaggtggttaacagaatgaataggt 684
Query: 61 tgacaagaactgctctaaccatgaagtttttattactatggctctgtgttatacagtgta 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 tgacaagaactgctctaatcatgaagtttttattactatggctctgtgttatacagtgaa 624
Query: 121 atctgaaccatgcag-tttttattactatggctttgtgatatacagtgaaatctggtctg 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctgaaccatgcagttttttattactatggctttgtgatatacagtgaaatctggtctg 564
Query: 180 gtaatccaactaggacttctctggccaccaggatgtgaaggatcaactgaaaggggaaca 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 563 gtaatccaactaggacttctctggccaccagtatgtgaaggatcaactgaaagggtaaca 504
Query: 240 gcatagtataaataatctgatcacaaacatgggaaaaa-tacagaacaaagagagatcaa 298
||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 gcagagtatagataatctgatcacaaacatgggaaaaaatacagaacaaagagagatcaa 444
Query: 299 ggtaaaataactgtaaggaagtctggaaaagttttgagaaac 340
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggtaaaataactgtaaggaagtctggaaaagttttgagaaac 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space: 244422
Effective search space used: 244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
