BAC Information

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BAC

Clone NameMSMg01-143J03
Chromosome5 (Build37)
Map Location 108,173,627 - 108,324,080
singlet/doubletdoublet
Overlap geneEvi5, 1700013N18Rik
Upstream geneEG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473
Downstream geneRpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J03.T7 (MSMg01no143_j03.b1)MSMg01-143J03.TJ (MSMg01no143_j03.g1)
ACCAG347881AG347882
length756700
length of high quality
(start - end)		191 (179 - 369)628 (73 - 700)
definitionCHROMAT_FILE: MSMg01no143_j03.b1 PHD_FILE: MSMg01no143_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005CHROMAT_FILE: MSMg01no143_j03.g1 PHD_FILE: MSMg01no143_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,323,892 - 108,324,080)(108,173,627 - 108,174,254)
sequence
AAAAAACAAGANGGGGGGNGNNNNNNNNTAACCCNTCGGNCCNCCCNCCC
CCNNCNCCCCTCTATAATTGCGGCCGCTAAACGACTCCAATTTCGAAAAG
ANGCGCGGAANNCCCAATTTCCCAAACAAAGGGNNNAAAAAAAGGANAAC
NCAAGNCCAACAGGNCACAAAAGCTCCTTTCCCCCAAATGTCAGCAGCAT
CAGAAACCAGTCTTCGTGACCTTCAGACACAATTGCCTTCTGTTTTGTGG
ACATAGCACAAGAAATTTGAGTTAGCATTTTCCTGGTGCCTAGATGGGAA
GATGTTTTGGGACTTGGAAGCCCAGGAACCACTCTGCTCTGAGCTGGACA
GTGTCCCAAGGGAAAGATATTTTTTTTTTTTGGAGCCCAAGAACCACACA
GCTCTGATCTGGGACAGTGTCCCCAGGGAAAGATTTCGTGAGACACAGGA
GCCCAGGAACCACACGGCTCTGACAGGAAGCCTCCTCAGCAGAGGCGCTG
CAGCTCCCAGGGAGGTTACCCCAGCTGAGCTGAGGCGCTCAGGAGCCTCA
GCCCTGCTCCTTTTTCTCTTCTCTTCTTTGGGTCTTCTGATGAGACACAC
CAGGCTGCAAACCTCATGAAAGAGATTTATTGGAGGTTCCAGGGTGAGGA
AGGACGAATCCAGGGATGGCTGCCCTCTGCTTTCTGGAGTAGACAGCAGG
GGACTGTATTGGGTTAGGCTTATATGGCTTCTTGGGGATGGAAAAGGGGT
GCCAAC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGATGATGCCTTCGATAACTTAAACT
GCATGCAGACTGCTTGGCACTCTGTGCGTGGAGCAGGTGGACGCGACATC
CCACTGAGGGACAGAAACCCTAGCAGTACCAATCCTCTCTGTGGCCAAAT
GTCCATAATAGGATTCTGGTGCCCCTCACTCTTAAAGTTAATAATCTAAG
GACATAAAATCTTGTAAAATGAGAAACTTTAATTATTTAAAGCAAAGGCA
CAAGTAGACATTTTAGGTTATACAGTGTTACAATGAAGAAAACCCCGCAG
GACAATGAAATACGCTTGTAACTTTGCATGTCCAATGGATTACCATGTCA
GCTCTTCTCTGGACCCAAGGGGTATGTAGACCCACAGATGTAAAAGTTGG
ATGTTAAATAGCATCTACCCTATTGCCATTAAGAAATTTTAATTAATTTC
AGAATTAATAAGAAATTAATTAAAAATTGTTTGCTAATCTAGAGCAGCAA
TAACTTTCAAGCTAAAACTCATTACTTTAGTAAGTTAAGTTACGGATTCT
ACAAATGTTGGCCATCGATGTCTTGGTATTGTGCAATATCCATGCTGGCC
ATGAGAAGCTTACCANAACATAATTGATATCCTTAACTTTTAAAAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j03.b1 MSMg01no143_j03.b1 CHROMAT_FILE:
MSMg01no143_j03.b1 PHD_FILE: MSMg01no143_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:10 2005
         (191 letters)



>mm_chr5_108323773_108324363
          Length = 591

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   cccccaaatgtcagcagcatcagaaaccagtcttcgtgaccttcagacacaattgccttc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cccccaaatgtcagcagcatcagaaaccagtcttcgtgaccttcagacacaattgccttc 249

                                                                       
Query: 63  tgttttgtggacatagcacaagaaatttgagttagcattttcctggtgcctagatgggaa 122
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 tgttttgtggacatagcacaagaaatttgcgttagcattttcctggtgcctagatgggaa 189

                                                                       
Query: 123 gatgttttgggacttggaagcccaggaaccactctgctctgagctggacagtgtcccaag 182
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatgtcttgggacttggaagcccaggaaccactctgctctgagctggacagtgtcccaag 129

                    
Query: 183 ggaaagata 191
           |||||||||
Sbjct: 128 ggaaagata 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no143_j03.g1 MSMg01no143_j03.g1 CHROMAT_FILE:
MSMg01no143_j03.g1 PHD_FILE: MSMg01no143_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:10 2005
         (628 letters)



>mm_chr5_108173427_108174454
          Length = 1028

 Score = 1154 bits (597), Expect = 0.0
 Identities = 620/628 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgatgatgccttcgataacttaaactgcatgcagactgcttggcactctgtgcgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgatgatgccttcgataacttaaactgcatgcagactgcttggcactctgtgcgtgga 260

                                                                       
Query: 61  gcaggtggacgcgacatcccactgagggacagaaaccctagcagtaccaatcctctctgt 120
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtggacatgacatcccactgagggacagaaaccctagcagtaccaatcctctctgt 320

                                                                       
Query: 121 ggccaaatgtccataataggattctggtgcccctcactcttaaagttaataatctaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccaaatgtccataataggattctggtgcccctcactcttaaagttaataatctaagga 380

                                                                       
Query: 181 cataaaatcttgtaaaatgagaaactttaattatttaaagcaaaggcacaagtagacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataaaatcttgtaaaatgagaaactttaattatttaaagcaaaggcacaagtagacatt 440

                                                                       
Query: 241 ttaggttatacagtgttacaatgaagaaaaccccgcaggacaatgaaatacgcttgtaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggttatacagtgttacaatgaagaaaaccccgcaggacaatgaaatacgcttgtaac 500

                                                                       
Query: 301 tttgcatgtccaatggattaccatgtcagctcttctctggacccaaggggtatgtagacc 360
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 501 tttgcatgtccaatggattaccatgtcagctcttctctggagggaaggggtatgtagacc 560

                                                                       
Query: 361 cacagatgtaaaagttggatgttaaatagcatctaccctattgccattaagaaattttaa 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 cacagatgtaaaagttggatgttaaatagcatctaccctattgccaataagaaattttaa 620

                                                                       
Query: 421 ttaatttcagaattaataagaaattaattaaaaattgtttgctaatctagagcagcaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatttcagaattaataagaaattaattaaaaattgtttgctaatctagagcagcaata 680

                                                                       
Query: 481 actttcaagctaaaactcattactttagtaagttaagttacggattctacaaatgttggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actttcaagctaaaactcattactttagtaagttaagttacggattctacaaatgttggc 740

                                                                       
Query: 541 catcgatgtcttggtattgtgcaatatccatgctggccatgagaagcttaccanaacata 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 741 catcgatgtcttggtattgtgcaatatccatgctggccatgaaaagcttaccaaaacata 800

                                       
Query: 601 attgatatccttaacttttaaaaactga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 attgatatccttaacttttaaaaactga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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