CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTTACCGGACAGAGTCTGCCCAGTAGTGGATGTCTACTGAGTG
TCATAAGTAGATTTGTGTGCACTGGCCACTGGTTATCTTTGGAAAGAAGA
AGTCACTCTATCTCTGCCTCCAAATATTTGAGTAAGCCAAAGGTATTGTG
GGATATAACATCCTCCAAGTTATCATTTTGGAAGCCAACTAGGGAAAACT
AGAATTTCCCAGTGGAATTTATGTTACCTTACTTCTCTAAGGAAATAAAT
TGAGGAATGACTAGACATTTATCTAGCCAGCCACAATTTTTCTTATTAAG
CAGGCTGGTGAAAATTGGCAGCACTCGTGCGCGCACACACACCATTACCA
AATTACAATAAACACCCCATGATAAGACTCACTGCAGCAAACATTATGAA
TGTCCACAAAAATCCCAGAGCTTGTCTCTTTCCAGTTTTCACAAATTACA
CTTCTCTAGTTTAGGTGATTTATTTTACCCAATAAAATCTGAGAAGTCCT
GGAACTCCTGGGCAGGAGCTTTAAGGCCAAATAGAAGATTCACTTTTTTC
TATAGCATTGATCAAGAAATCCTCTGCCAAAGTCAAGATTTCTGTGTGCT
ATGGTGGCCACCTCTTGGTTCTCTATGCTTTACCCCTTCAAAAA

CGAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACTGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAGCATCCTTGTTCCACCCAGTAAGAAGGACACAT
GCTCCACTATGTTCATAGGAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGTCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAACGGAGTACTACTCTGCTATTAAAAAGAATGAATTTATGAAAT
TCTTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGGGGGGGGGGG
TAACACAATCACAAAAGAACTCAAATGATATGTACTTACTGATAAGTGGA
TATTAGCCCCCACACTTAGAATACCCAAGTTAAAAGTTGTAAAACACATG
AAACTCAAGAAGAGTGAAGACCAAAGTGTGGTCACTTTGCCCCTTCTTAG
AATTGGGAACAAAACACTCATGGAAGGAGTTACAGAGACTAAGTGTGGAG
CTGAGACAAAAGGATGGATCATCCACAGAAGTGGATGCTCACAGTCTGTT
ATTGAATGGGACACTCGCGCCCTCAATGCAGGAGCTAGAGAAAGCACTCA
GGAGCTAAAGGGGTCTGCCCCTGCGTTTGTTTATTCACTAA

Query= MSMg01no143_j11.b1 MSMg01no143_j11.b1 CHROMAT_FILE:
MSMg01no143_j11.b1 PHD_FILE: MSMg01no143_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:11 2005
         (645 letters)



>mm_chr5_54605707_54606751
          Length = 1045

 Score = 1141 bits (590), Expect = 0.0
 Identities = 631/650 (97%), Gaps = 9/650 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttaccggacagagtctgcccagtagtggatgtctactgagtgtcataagt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcttgtttacaggacagagtctgcccagtagtggatgtctactgagtgtcataagt 255

                                                                       
Query: 65  agatttgtgtgcactggccactggttatctttggaaagaagaagtcact---------ct 115
           |||||||||||| ||||||||||||||||||||||||||||||||||||         ||
Sbjct: 256 agatttgtgtgcgctggccactggttatctttggaaagaagaagtcactaatgatactct 315

                                                                       
Query: 116 atctctgcctccaaatatttgagtaagccaaaggtattgtgggatataacatcctccaag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 316 atctctgcctccaaatatttgagtaagccaaaggtattgtgggatataatatcctccaag 375

                                                                       
Query: 176 ttatcattttggaagccaactagggaaaactagaatttcccagtggaatttatgttacct 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttatcattttggaagccaactagggaaaactagaatttcccagtggaatttatgttacct 435

                                                                       
Query: 236 tacttctctaaggaaataaattgaggaatgactagacatttatctagccagccacaattt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacttctctaaggaaataaattgaggaatgactagacatttatctagccagccacaattt 495

                                                                       
Query: 296 ttcttattaagcaggctggtgaaaattggcagcactcgtgcgcgcacacacaccattacc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcttattaagcaggctggtgaaaattggcagcactcgtgcgcgcacacacaccattacc 555

                                                                       
Query: 356 aaattacaataaacaccccatgataagactcactgcagcaaacattatgaatgtccacaa 415
           ||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaattacaataaagatcaaatgataagactcactgcagcaaacattatgaatgtccacaa 615

                                                                       
Query: 416 aaatcccagagcttgtctctttccagttttcacaaattacacttctctagtttaggtgat 475
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 616 aaatcccagagcttgtctctttccagtttttacaaattacacttctctagtctaggtgat 675

                                                                       
Query: 476 ttattttacccaataaaatctgagaagtcctggaactcctgggcaggagctttaaggcca 535
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 ttattttacccaataaaatctgagaagtcctggaattcctgggcaggagctttaaggcca 735

                                                                       
Query: 536 aatagaagattcacttttttctatagcattgatcaagaaatcctctgccaaagtcaagat 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatagaagattcacttttttctatagcattgatcaagaaatcctctgccaaagtcaagat 795

                                                             
Query: 596 ttctgtgtgctatggtggccacctcttggttctctatgctttaccccttc 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttctgtgtgctatggtggccacctcttggttctctatgctttaccccttc 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)