Query= MSMg01no143_n17.b1 MSMg01no143_n17.b1 CHROMAT_FILE:
MSMg01no143_n17.b1 PHD_FILE: MSMg01no143_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(523 letters)
>mm_chr5_101857763_101858686
Length = 924
Score = 928 bits (480), Expect = 0.0
Identities = 513/524 (97%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 aggctggcctcaaactcagaaatccgcctgcctctgcctcccaagcgctgggattaaagg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aggctggcctcaaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaagg 260
Query: 61 cgtgcgccaccacacccggcttcttgcttatattttattgtgacttctctcctgctattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgcgccaccacacccggcttcttgcttatattttattgtgacttctctcctgctattt 320
Query: 121 tttcttttgaggcaattgactcccttgatgtttgttttagacttttctcttgaaacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttttgaggcaattgactcccttgatgtttgttttagacttttctcttgaaacattt 380
Query: 181 gcacaagctcattgctgtgaaaggtaccaggttcttgggtctgccactggggaatgagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gcacaagctcattgctgtgaaaggtaccaggttcttgggtctgccactgggaaatgagca 440
Query: 241 cagccttgtgtacatttacaatgtatcctataggcatttaaaatgtatcatttttgattg 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 cagccttgtggatatttacaatgtatcctataggcatttaaaatgtatcatttttaattg 500
Query: 301 tttgcttgcttgtttgaatttaaattagataaaacgattagtctaccccacaaaaataac 360
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tttgattgcttgtttgaatttaaattagataaaacgattagtctaccagacaaaaataac 560
Query: 361 tggttgaagtggtacagagcctatctctcggcgattgttcttcataggctgtctgctgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggttgaagtggtacagagcctatctctcggcgattgttcttcataggctgtctgctgga 620
Query: 421 caagttgagagcttattcttccatgtataaggtctagagttgggtgtga-tgtgcagacg 479
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 621 caagttgagagcttattcttccatgtataaggtctagagttcggtgtgaatgtgcagacg 680
Query: 480 gagttgtttgtttgtttgcttgtttgggtatgtttactttcgca 523
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gagttgtttgtttgcttgcttgtttgggtatgtttactttcgca 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_n17.g1 MSMg01no143_n17.g1 CHROMAT_FILE:
MSMg01no143_n17.g1 PHD_FILE: MSMg01no143_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(311 letters)
>mm_chr5_102015407_102016117
Length = 711
Score = 561 bits (290), Expect = e-164
Identities = 305/310 (98%)
Strand = Plus / Minus
Query: 1 tgtcagctgatgaggactgcacatgggtttataacccttttcaaagtggaaggcagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgtcagctgatgaggactgcacatgggtttataacccttttcaaagtggaaggcagagag 281
Query: 61 ctgacagatgtttgttccaggccataagtgagggagccagtcctgagccgggcaaacaga 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgacagatgcttgttccaggccataagtgagggagccagtcctgagccgggcaaacaga 221
Query: 121 gcccacagtcacaggctgtcattttgttttggtagtgctgggggtggaaaccagggcttt 180
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 220 acccacagtcacaggctgtcgttctgttttggtagtgctgggggtggaaaccagggcttt 161
Query: 181 gcatatgctgggtgagggagctcactattgctgagctatgccccagctaagaggccactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcatatgctgggtgagggagctcactattgctgagctatgccccagctaagaggccactt 101
Query: 241 tgagatcaaggcagataatggaagcgtagcctactttcatgggtgatgggagagtggttt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgagagcaaggcagataatggaagcgtagcctactttcatgggtgatgggagagtggttt 41
Query: 301 atgtgttgtc 310
||||||||||
Sbjct: 40 atgtgttgtc 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
