Query= MSMg01no143_n20.b1 MSMg01no143_n20.b1 CHROMAT_FILE:
MSMg01no143_n20.b1 PHD_FILE: MSMg01no143_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(582 letters)
>mm_chr5_115563303_115564283
Length = 981
Score = 961 bits (497), Expect = 0.0
Identities = 558/579 (96%), Gaps = 3/579 (0%)
Strand = Plus / Minus
Query: 5 gaattcaggacctccggaagaacagtcagtgctcttaaccactgagccatctctccagcc 64
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gaattcaggacctttggaagagcagtcagtgctcttaaccactgagccatctctccagcc 856
Query: 65 tgtaaaatagtttttaaataaactattaatgcagagtgattggaaaaagccaggcagtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgtaaaatagtttttaaataaactattaatgcagagtgattggaaaaagccaggcagtgg 796
Query: 125 tggcgcacgtctttaatcccagcacttgggaggccgaggcaggcggatttctgagttcaa 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 795 tggcgcacgtctttaatcccagcactcgggaggccgaggcaggcggatttctgagttcga 736
Query: 185 ggccagcctggtctatagagtgagtttcaggatagccagggctatacaaagaaaccctgt 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 735 ggccagcctggtctatagagtgagtttcaggataaccagggctatacaaagaaaccctgt 676
Query: 245 ctcaaaaaacaaaaaacaaaacaaacaaaactctctttgtttcgttcagtcttgaccact 304
|||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 675 ctcaaaaaacaaaaaacaaaacaaacaaaa--ctctttgttccgttcagtcctgaccact 618
Query: 305 tatgccctttaccactcacgcactagaaagtgcttgtcatgcattctttcgctccctggc 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 tatgccctttaccactcacgcactagaatgtgcttgtcatgcattctttcgctccctggc 558
Query: 365 cctgccca-acaacaggaagggaaaacaaaaacaaaactccacaaggtgtctgcccactt 423
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctgggtatacaacaggaagggaaaacaaaaacaaaactccacaaggtgtctgcccactt 498
Query: 424 ggtcagggaaaaagacagtagtcaaactagcatgttaggttgggcatggtggcgcacgcc 483
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 497 ggtcagggaaaaagacagtagtcaaactagcatgttaggctgggtgtggtggcgcacgcc 438
Query: 484 tttaatcccagcacttaggaggcagaagcaggcggatttctgagttcgaggccagcctgg 543
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 tttaatcccagcacttaggaggcagaggcaggcggatttctgagttcgaggccagcctgg 378
Query: 544 tctacagagtgagctccaggacagagaaaccctgtctca 582
||||||||||||| |||||||||||||| ||||||||||
Sbjct: 377 tctacagagtgagttccaggacagagaagccctgtctca 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_n20.g1 MSMg01no143_n20.g1 CHROMAT_FILE:
MSMg01no143_n20.g1 PHD_FILE: MSMg01no143_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(180 letters)
>mm_chr5_115446538_115447117
Length = 580
Score = 348 bits (180), Expect = e-100
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 aagaggtccaggctccgtgagagaccctgtgctggggtgacaagcacgtgatcacgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaggtccaggctccgtgagagaccctgtgctggggtgacaagcacgtgatcacgccag 260
Query: 61 gctttaacttgggacctggagatttgcacttaggtcttgttgcttgttcttagccactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttaacttgggacctggagatttgcacttaggtcttgttgcttgttcttagccactga 320
Query: 121 gctgtcttcctaacgcttatacgcttagtaggggtttgtttagttttgattttttgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtcttcctaacgcttatacgcttagtaggggtttgtttagttttgattttttgtttt 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
