BAC Information

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BAC

Clone NameMSMg01-143O18
Chromosome5 (Build37)
Map Location 34,037,832 - 34,212,080
singlet/doubletdoublet
Overlap geneFgfr3, Letm1, LOC100040332, Whsc1
Upstream geneLOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3
Downstream geneWhsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143O18.T7 (MSMg01no143_o18.b1)MSMg01-143O18.TJ (MSMg01no143_o18.g1)
ACCAG348139AG348140
length672678
length of high quality
(start - end)		340 (71 - 410)603 (74 - 676)
definitionCHROMAT_FILE: MSMg01no143_o18.b1 PHD_FILE: MSMg01no143_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:36 2005CHROMAT_FILE: MSMg01no143_o18.g1 PHD_FILE: MSMg01no143_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,037,832 - 34,038,171)(34,211,478 - 34,212,080)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGAATGCGCGGAAT
TCCAGGGTCTACACCTGGACCAAAAGGGTTCTTCCTGCCGTCAGCCGACC
ACTTGTGGGCCCTGGCTGGGAGGCCTGCACACAGCCCACATGGACCTGCC
CAACCCGCTCCGCTCCTGTTAGTCGCCCCCTCCCGGGGCTTCCCAGCCCG
GCGCGGAGATTATGCAAATCCCCGGCGGCTCCTTAATTAAATCCCTAACG
AGGCGCTGGGGCCGGGCCAGGGGCGGCGCTGAAAGCTGGGGTCACGCTCC
GGAGGGGCCGCCGTCTGTGCTGCGAGGGGCCAGCGGCGGGCCAGGCCTGA
GCGCAGCGCGCCGAGGGGTGGCCCAGTCCCAGTCCCGAGGCCTCGTGCGC
GCACCGCTTCTCCCCCAGTCCCCGCGCATTGTACGGGGGCCGGTCCCCGG
CAGGGAGGCCGTGGGCGGAGCGGTCGTCGGGGCCGGGGCCCCCCGCGACC
TGCACTCCCCTTTCAGCCGCCTGTTGTTGGGCCAACATCTCGTTTCGCGG
CCGCCTGATAGGCCGGGATTAGCGTACCTCAGCGGCCTTTGAGTGGCGCC
CGGGACGCCCTTTTCCCTCTCACTTATTAGAGTGTTTTTTCCTATTACCT
CGGTACTATAAATACTTATCTC

CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAGTACAGTGACAGTTCTAACTTGCT
TCCACACTCACATCTGAGACATGCCAGAACAAAGAACCAGAAACACGCAA
CGCATGAGGACCAAGAAACCTTTGGTTTTCCCACAGGCTATGAGCCCCTC
CATTCCACCAGGGTGGGTGCACAGTAGCATGTCAGTGTGGCCAAGATAGC
ATGTCCTGGTAGAGCCAGTGTGAATTTCCTTTCATGTGAGAAAACAGAGT
TAGGTTTACAGAACATACCAGTTTAAAACAGACTGCAACAACGATTACTC
TGCAACCAGATGTATGCATGTGCACCTACACATTCACCATGTGCATGTAT
GTACTCATATTCAAAGCGCTCAGTCTAAAATAGTGCACCATTTTGTCAAT
TCTGTGAATTTTAGATGGCTAAGAACACTTTTTAGATGGCTAAGAATACC
TGAACCTCACCTATGCCTGTGGAGAACAACGTAATTCTTTAAAGCAGGAT
TATCACTCACATTGCCACTTGAGTAAATAATGGCCTTCCCATGAACGCCA
CCGTATCACAATCATCATTATTTTACCTCATGCTCAGTTAAGGATGCAGA
AGGAGATGAACTTTTGTTAAACCCAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_o18.b1 MSMg01no143_o18.b1 CHROMAT_FILE:
MSMg01no143_o18.b1 PHD_FILE: MSMg01no143_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:36 2005
         (340 letters)



>mm_chr5_34037632_34038371
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaagggttcttcctgccgtcagccgaccacttgtgggccctggctgggaggcctgcac 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaagggttcttcctgctgtcagccgaccacttgtgggccctggctgggaggcctgcac 260

                                                                       
Query: 61  acagcccacatggacctgcccaacccgctccgctcctgttagtcgccccctcccggggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcccacatggacctgcccaacccgctccgctcctgttagtcgccccctcccggggct 320

                                                                       
Query: 121 tcccagcccggcgcggagattatgcaaatccccggcggctccttaattaaatccctaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccagcccggcgcggagattatgcaaatccccggcggctccttaattaaatccctaacg 380

                                                                       
Query: 181 aggcgctggggccgggccaggggcggcgctgaaagctggggtcacgctccggaggggccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcgctggggccgggccaggggcggcgctgaaagctggggtcacgctccggaggggccg 440

                                                                       
Query: 241 ccgtctgtgctgcgaggggccagcggcgggccaggcctgagcgcagcgcgccgaggggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgtctgtgctgcgaggggccagcggcgggccaggcctgagcgcagcgcgccgaggggtg 500

                                                   
Query: 301 gcccagtcccagtcccgaggcctcgtgcgcgcaccgcttc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccagtcccagtcccgaggcctcgtgcgcgcaccgcttc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_o18.g1 MSMg01no143_o18.g1 CHROMAT_FILE:
MSMg01no143_o18.g1 PHD_FILE: MSMg01no143_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:36 2005
         (603 letters)



>mm_chr5_34211278_34212280
          Length = 1003

 Score = 1158 bits (599), Expect = 0.0
 Identities = 602/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtacagtgacagttctaacttgcttccacactcacatctgagacatgccagaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 taagtacagtgacagttctaacttgcttccacactcacatctgagacatgccagaacaaa 744

                                                                       
Query: 61  gaaccagaaacacgcaacgcatgaggaccaagaaacctttggttttcccacaggctatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaaccagaaacacgcaacgcatgaggaccaagaaacctttggttttcccacaggctatga 684

                                                                       
Query: 121 gcccctccattccaccagggtgggtgcacagtagcatgtcagtgtggccaagatagcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcccctccattccaccagggtgggtgcacagtagcatgtcagtgtggccaagatagcatg 624

                                                                       
Query: 181 tcctggtagagccagtgtgaatttcctttcatgtgagaaaacagagttaggtttacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcctggtagagccagtgtgaatttcctttcatgtgagaaaacagagttaggtttacagaa 564

                                                                       
Query: 241 cataccagtttaaaacagactgcaacaacgattactctgcaaccagatgtatgcatgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cataccagtttaaaacagactgcaacaacgattactctgcaaccagatgtatgcatgtgc 504

                                                                       
Query: 301 acctacacattcaccatgtgcatgtatgtactcatattcaaagcgctcagtctaaaatag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 acctacacattcaccatgtgcatgtatgtactcatattcaaagtgctcagtctaaaatag 444

                                                                       
Query: 361 tgcaccattttgtcaattctgtgaattttagatggctaagaacactttttagatggctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcaccattttgtcaattctgtgaattttagatggctaagaacactttttagatggctaa 384

                                                                       
Query: 421 gaatacctgaacctcacctatgcctgtggagaacaacgtaattctttaaagcaggattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaatacctgaacctcacctatgcctgtggagaacaacgtaattctttaaagcaggattat 324

                                                                       
Query: 481 cactcacattgccacttgagtaaataatggccttcccatgaacgccaccgtatcacaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcacattgccacttgagtaaataatggccttcccatgaacgccaccgtatcacaatc 264

                                                                       
Query: 541 atcattattttacctcatgctcagttaaggatgcagaaggagatgaacttttgttaaacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcattattttacctcatgctcagttaaggatgcagaaggagatgaacttttgttaaacc 204

              
Query: 601 caa 603
           |||
Sbjct: 203 caa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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