BAC Information

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BAC

Clone NameMSMg01-144B07
Chromosome5 (Build37)
Map Location 87,757,791 - 87,758,169
singlet/doubletsinglet
Overlap geneUgt2a3
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468
Downstream geneLOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B07.T7 (MSMg01no144_b07.b1)MSMg01-144B07.TJ (MSMg01no144_b07.g1)
ACCAG348247AG348248
length716715
length of high quality
(start - end)
600 (48 - 647)380 (107 - 486)
definitionCHROMAT_FILE: MSMg01no144_b07.b1 PHD_FILE: MSMg01no144_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:48 2005CHROMAT_FILE: MSMg01no144_b07.g1 PHD_FILE: MSMg01no144_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCTCACCTGAGTACCACCGAATGGCAGAGAAGCACCTGAAAAAA
TGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCT
CAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAA
CCTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCA
AGAAAAATGAAGACTG
NNCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGGATATCAACTGAAAATGGC
ATAACAAAGTACAGTAAGACTAGGCACAAACCTTCATGGAGAATAATCCA
AGTACTTTTGAAATCCTGTGACTGTCACGGAATGTTAGAAAAACCTCTGG
TCATGATTTAGCAAGTTGGTTTACAAAAAGAGAAAGGTTATACACACAGT
AGAGAGAAACCAGACTTAAAAATAAACACCATAAATGTTTTTCATTTTAC
CAAAGTATACTTCATTGCAAGTAGAAACCTACGGTCTCTGATTCTTTCCA
AGTTGAATATTCTATACTCTCAAATACAGAATTCTAATATTGTCAAAAAT
AATTAATTTTCCAATTTATATTTAATAAATTTTATAAATTTAATAAATAG
AATTCTATTTTCCATATACTTTTATTCGTAAAATGGGACAAGATTCTTTA
TGTGCTAGACTAAGTGCATAAAATTATATGAAATATGCTAACAATACTTT
TAAAAACTAGGGTTTATTTCTACAGTTTTCTTCTACAATATTTTACCACT
TTTTTACATGAATTTTTTTAACTCTACAGAATATATTATGTATGAAATGT
CAACTGTTACGCAATTAACTAATATAGAAAAAGTGAAAACACCCTGATAG
AAACTGAACGATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b07.g1 MSMg01no144_b07.g1 CHROMAT_FILE:
MSMg01no144_b07.g1 PHD_FILE: MSMg01no144_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:48 2005
         (380 letters)



>mm_chr5_87757682_87758461
          Length = 780

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtacagtaagactaggcacaaaccttcatggagaataatccaagtacttttgaaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagtacagtaagactaggcacaaaccttcatggagaataatccaagtacttttgaaatcc 429

                                                                       
Query: 61  tgtgactgtcacggaatgttagaaaaacctctggtcatgatttagcaagttggtttacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtgactgtcacggaatgttagaaaaacctctggtcatgatttagcaagttggtttacaa 369

                                                                       
Query: 121 aaagagaaaggttatacacacagtagagagaaaccagacttaaaaataaacaccataaat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaagagaaaggttatacacatagtagagagaaaccagacttaaaaataaacaccataaat 309

                                                                       
Query: 181 gtttttcattttaccaaagtatacttcattgcaagtagaaacctacggtctctgattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 gtttttcattttaccaaagtatacttcattgcaagtagaaacctagggtctctgattctt 249

                                                                       
Query: 241 tccaagttgaatattctatactctcaaatacagaattctaatattgtcaaaaataattaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tccaaattgaatattctatactctcaaatacagaattctaatattgtcaaaaataattaa 189

                                                                       
Query: 301 ttttccaatttatatttaataaattttataaatttaataaatagaattctattttccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttttccaatttatatttaataaattttataaatttaataaatagaattctattttccata 129

                              
Query: 361 tacttttattcgtaaaatg 379
           |||||||||||||||||||
Sbjct: 128 tacttttattcgtaaaatg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)