Query= MSMg01no144_c01.b1 MSMg01no144_c01.b1 CHROMAT_FILE:
MSMg01no144_c01.b1 PHD_FILE: MSMg01no144_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:52 2005
(685 letters)
>mm_chr5_117843772_117844856
Length = 1085
Score = 493 bits (255), Expect = e-143
Identities = 296/315 (93%), Gaps = 11/315 (3%)
Strand = Plus / Minus
Query: 5 gaattcattgagagttcagttttcaaagggctggttatcttggtggggagtgtggcagca 64
|||||||||||||||| |||| ||| ||||||||||||| || |||||||| ||||||||
Sbjct: 312 gaattcattgagagtttagttctcagagggctggttatcgtgatggggagtatggcagca 253
Query: 65 gacaggcatagtgccagagcaggttttgggaaggattagaaggtgtggtgtaagcatata 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacaggcatagtgccggagcaggttttgggaaggattagaaggtgtggtgtaagcatata 193
Query: 125 ttttttgcaacctac----ttttaaaaaaaag----atttatttatttatttactatata 176
||||||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct: 192 ttttttgcaacctactttttttt---aaaaagatttatttatttatttatttactatata 136
Query: 177 ttgttctcaatgcatatgtgactacacaccagaagagggcatgtgggtgctgggaattga 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 135 ttgttctcaatgcatatgtgactacacaccaggagagggcatgtgggtgctgggaattga 76
Query: 237 actcagaacctctggaaaagcagctgggacttttgacctctgagccatctctccagcctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 actcagaacctctggaaaagcagctgggacttttgacctctgagccatctctccagcctg 16
Query: 297 aaacctacttttaat 311
|||||||||||||||
Sbjct: 15 aaacctacttttaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_c01.g1 MSMg01no144_c01.g1 CHROMAT_FILE:
MSMg01no144_c01.g1 PHD_FILE: MSMg01no144_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:52 2005
(503 letters)
>mm_chr5_117789489_117790391
Length = 903
Score = 897 bits (464), Expect = 0.0
Identities = 491/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 1 ctaaagggccaccctggttgcccatcatatgaaggccctcaaatccgtgttcacttgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaagggccaccctggttgcccatcatatgaaggccctcaaatccgtgttcacttgagg 260
Query: 61 atctccacaggccccatgtctttgcgagcctttcttcccatccttgcctgctacttctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctccacaggccccatgtctttgcgagcctttcttcccatccttgcctgctacttctgc 320
Query: 121 tcagataacctcttcaatggatatgtgccatgctgctcaagtgtgtgtgacagtttgtgt 180
||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatataatctcttgaatggatatgtgccatgctgctcaagtgtgtgtgacagtttgtgt 380
Query: 181 atgtggctgttgaacctgtgtgtctgtgcaccacatgagtacccagtacccttggaggtc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggctgttggacctgtgtgtctgtgcaccacatgagtacccagtacccttggaggtc 440
Query: 241 agaagagggccttggatccccctggaagaagagttagagatgttgtaagttgccatgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagagggccttggatccccctggaagaagagttagagatgttgtaagttgccatgtgg 500
Query: 301 gtgctgggaacggtacccatgtcctatgcaagaatataaatgaccttgtcttggttaggg 360
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtactgggaacggtacccatgtcctatgcaagaatataaatgac-ttgtcttggttaggg 559
Query: 361 tttctatgactgtggtgagacaccatgaccaaagtcaaagagtttatttgccttacactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttctatgactgtggtgagacaccatgaccaaagtcaaagagtttatttgccttacactt 619
Query: 421 ccacatgactgttgatcatggaaggaattcaggacattgaattctcgaagggaggaacct 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 ccacatgactgttgatcatggaaggaattcaggacattgaattcttgaagggaggaacct 679
Query: 481 cgaggcagtgagttgatgca 500
|||||||| |||||||||||
Sbjct: 680 cgaggcag-gagttgatgca 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
