BAC Information

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BAC

Clone NameMSMg01-144D12
Chromosome5 (Build37)
Map Location 15,184,993 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144D12.T7 (MSMg01no144_d12.b1)MSMg01-144D12.TJ (MSMg01no144_d12.g1)
ACCAG348350AG348351
length732731
length of high quality
(start - end)		683 (46 - 728)651 (75 - 725)
definitionCHROMAT_FILE: MSMg01no144_d12.b1 PHD_FILE: MSMg01no144_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:59 2005CHROMAT_FILE: MSMg01no144_d12.g1 PHD_FILE: MSMg01no144_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGTCAATTTGACACAGAGAGAACAGACAAAGAATCCGTGGAACCAA
GATCCGGTTCTTTGAGACAATCAACAAGGTAGACTTATGCTTAGGCAAAT
TAACTGAAAGGTAGAGAGACAATACCCAGAATAGCAAAATCAGAAATGAA
ACAGGAGACATAACAATGGACACTGAGGTAATTGAAAGAATCACTAGGTC
TTACTGCAGAAGCCTGTACTGCAAAAAATAGCAAAATCCAAATGAAATGG
GTGACTTATAGACAGCTATCAATTATCAAAGTTAAATGAAGATCTGGTAA
AGTAACTAACAGTCCTATAACCCCTAAGGAAATAGAAACAGTCATCAAAA
GTCCTACACTCCAAAAAAGCCCAAGGGCAGAAAGTTGTAGTGCAGAATTC
TACTAGATATTCAAAAAAGAGTTAGTGAAATACTCCTCAAATTATTCATA
AAGTAGAAACAGAAGAAACATAGCTAAACTCATTCTATGAGTTCATAGTC
ACCCTGGTACAGAAACCACACAAAGACTCAACAAAGAAAGAGGAATTCAG
TCCAATTTCTTTTTTAACCACTTCATACTAATTTACTTATCTTCATAATA
AGGAAGAATATGTCTTCCTTGTGTATTTAAAATTATGAGATTAATTACTG
ATATTGGACAGAAGGTAATTGGGTTCATAAAC

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAGCCCAAAAG
GCAGAGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCTGGAAGAGC
AGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGCCATGCTGGA
TGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATGCTTCTAGA
AAACTCCACACTGAGTCAAAGCTTTCTGTTCCCAAGCAAACCACAGCACT
GATCTCCATCTGTTTTTCTCTGACTCTTAAAACATCCTTCCAAATTGAAA
AACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGATTGGAAAGGAG
CACCACTTTTTGTTCACAACACAACTTCAGAAAACAAAAGAGAAGCCTCA
AACGGGCCATAAGCCACAAATTGAAAAACAAAAGAAAAACAAGGCTGGCT
GTCTACTGCCAGCAGGAGTTCACCAGGGAGAGGAGCTCTGACTCCAAAAT
AGTCACTTTTCCATTTTGTCAATGATGGCAAAAGGCCATGGGTGCTGACT
AGAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGTCTCTTTGTTGCAAG
AACTGCATTCTCACTTGTATCCAATGCTGATAACTGGCAGCAGAAACTCT
GGGAGGGTCACATCTATGTGGTGACACAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_d12.g1 MSMg01no144_d12.g1 CHROMAT_FILE:
MSMg01no144_d12.g1 PHD_FILE: MSMg01no144_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:59 2005
         (651 letters)



>mm_chr5_15184793_15185843
          Length = 1051

 Score = 1158 bits (599), Expect = 0.0
 Identities = 638/651 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 792

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 732

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagaaaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 731 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 672

                                                                       
Query: 181 tccacactgagtcaaagctttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 612

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 552

                                                                       
Query: 301 tgccttgccaaaggattggaaaggagcaccactttttgttcacaacacaacttcagaaaa 360
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 551 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 492

                                                                       
Query: 361 caaaagagaagcctcaaacgggccataagccacaaattgaaaaacaaaagaaaaacaagg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 491 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 432

                                                                       
Query: 421 ctggctgtctactgccagcaggagttcaccagggagaggagctctgactccaaaatagtc 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtc 372

                                                                       
Query: 481 acttttccattttgtcaatgatggcaaaaggccatgggtgctgactagaggaaggaaagg 540
           |||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 371 actttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaagg 312

                                                                       
Query: 541 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 252

                                                              
Query: 601 tgctgataactggcagcagaaactctgggagggtcacatctatgtggtgac 651
           ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 251 tgctgataactggcagcagaaactctgggagggtcacatatatgtggtgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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