Query= MSMg01no144_p05.b1 MSMg01no144_p05.b1 CHROMAT_FILE:
MSMg01no144_p05.b1 PHD_FILE: MSMg01no144_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:54 2005
(607 letters)
>mm_chr5_106743763_106744770
Length = 1008
Score = 1131 bits (585), Expect = 0.0
Identities = 600/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 4 ttatcttatgtacttatttaactaacattcaaactgacaagactcggctttccgggcctt 63
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ttatcttatgtacttatttaactaacattcaaactgacaagactcggctttctgggcctt 263
Query: 64 cctttcagacttttatgtgggaatgatcagatggagctcagctcccataaactttgcatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctttcagacttttatgtgggaatgatcagatggagctcagctcccataaactttgcatg 323
Query: 124 tttttgatttcacacacaaactgaaggttagaattctactccgtgtcctcagtcattcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttgatttcacacacaaactgaaggttagaattctactccgtgtcctcagtcattcag 383
Query: 184 gattttttttttt-aaatctttgaacatgacttcaaaccctgccaaaacacaacccaaat 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattttttttttttaaatctttgaacatgacttcaaaccctgccaaaacacaacccaaat 443
Query: 243 acatacacttctatgtctgtacaaatacgtaaaagaaatgggtatgtcagctttcaatgg 302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acacacacttctatgtctgtacaaatacgtaaaagaaatgggtatgtcagctttcaatgg 503
Query: 303 gtaccagcctaatggaagctttaactactgccagggaacacagacagccagaactaacta 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 gtaccagcctaatggaagctttaactactgccagggaacaaagacagccagaactaacta 563
Query: 363 gggccgctttgttcaagggtatgaagacgttcaggaagacgggagacgaactgcacatag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggccgctttgttcaagggtatgaagacgttcaggaagacgggagacgaactgcacatag 623
Query: 423 caacaggaataaagcaaacattcctatggccatagtaatccataccagcttctccctgag 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 caacaggaataaagcaaacattcctatggccatagtaatccacaccagcttctccctgag 683
Query: 483 ctcctgctgtactgataacagcccccaaccagattaaatacttaattacccttgttgtga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctcctgctgtactgataacagcccccaaccagattaaatacttaattacccttgttgtga 743
Query: 543 aaaaagtacttattttgtgtcatgtccatcagcctcccaaatataaatgttataattata 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaaagtacttattttgtgtcatgtccatcagcctcccaaatataaatgttataattata 803
Query: 603 tggcg 607
|||||
Sbjct: 804 tggcg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_p05.g1 MSMg01no144_p05.g1 CHROMAT_FILE:
MSMg01no144_p05.g1 PHD_FILE: MSMg01no144_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:54 2005
(566 letters)
>mm_chr5_106840612_106841579
Length = 968
Score = 1038 bits (537), Expect = 0.0
Identities = 561/569 (98%), Gaps = 4/569 (0%)
Strand = Plus / Minus
Query: 1 cttgccccctggagtctccatgtattatg-tttttttttcttatctgacatacaatccat 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 768 cttgccccctggagtctccatgtattatgttttttttttcttatctgacatacaatccat 709
Query: 60 actttaaagcctatcttttatccattcgatacagtttaaagttttgttgactgacagttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 actttaaagcctatcttttatccattcgatacagtttaaagttttgttgactgacagttt 649
Query: 120 atgaaaacaagacatgttcacttttttaaaaccgagaaaacagagtaatctcttagcagc 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 648 atgaaaacaagacatgttcactttttcaaaaccgagaaaacagagtaatctcttagcagc 589
Query: 180 acacacacacaaaaatccccaccggtgacaccatccagtttcctaaaagaaacatattgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acacacacacaaaaatccccaccggtgacaccatccagtttcctaaaagaaacatattgt 529
Query: 240 tcgctagctcctaaaatgtgattcaaaacact-agcgacaggtgaacgaaa-gggggaaa 297
|||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||
Sbjct: 528 tcgctagctcctaaaatgtgattcaaaacactca-cgacaggtgaacaaaaggggggaaa 470
Query: 298 ttaagatacggcgcaaacaaagaagcattaataattcaggtaaataccatctgtgtacaa 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 469 ttaagatacggcgcaaacaaagaagcattaataattcaggtaaatacaatctgtgtacaa 410
Query: 358 aagaagctgtcaaggtaactgcctgattctgcaggacaggacatttaggcagtgggaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaagctgtcaaggtaactgcctgattctgcaggacaggacatttaggcagtgggaaac 350
Query: 418 gagctgagttttgaacattctgtgctctgtgcaaaagctctacacagtttgaattctctc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagctgagttttgaacattctgtgctctgtgcaaaagctctacacagtttgaattctctc 290
Query: 478 actagatctccttctgatccatgtgttcatatggcatgtgtgcacatacacatgtgtgtt 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 289 actagatctccttctgatccatgtgttcatatggcgtgtgtgcacatacacatgtgtgtt 230
Query: 538 tgcctgcatggacatacatatgtgtgcac 566
|||||||||||||||||||||||||||||
Sbjct: 229 tgcctgcatggacatacatatgtgtgcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 968
Length adjustment: 10
Effective length of query: 556
Effective length of database: 958
Effective search space: 532648
Effective search space used: 532648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
