BAC Information

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BAC

Clone NameMSMg01-145F15
Chromosome5 (Build37)
Map Location 89,676,116 - 89,832,501
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145F15.T7 (MSMg01no145_f15.b1)MSMg01-145F15.TJ (MSMg01no145_f15.g1)
ACCAG349177AG349178
length688692
length of high quality
(start - end)		562 (65 - 626)568 (77 - 644)
definitionCHROMAT_FILE: MSMg01no145_f15.b1 PHD_FILE: MSMg01no145_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:24 2005CHROMAT_FILE: MSMg01no145_f15.g1 PHD_FILE: MSMg01no145_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(89,676,116 - 89,676,677)(89,832,050 - 89,832,501)
sequence
NTTATCATAATTTGGGCGCTATACGACTCCTATTCGAGAGGACCGCGGAT
TCAGGGAATAGCAAGGAATTACATGTTCTATGAAATAATGTTAAAAATTG
AAGAGTAAAAGGATATATAATATGTGTGTGTATTAAAATATAAGCCTCAG
TGGTCACAAGAAGACACGGTCTAAAATATGTACACACAGGATTGTATAAT
TTTAGATCATTAAGAACAAAGTTTTTATAACACTAAAAAAACAAAATTAA
ATTAATTTTTAAAAATTTTGTTTTAATTGTACTTTAAAAAATAAGATATA
GGAAGAATTCTTAAATAAATATTTTAAACACAGTGAGAGTAATACAGCTA
ATTATTTTGCAGTATCTTTTCTTTTTCTAAAAATCTTAAACTTCCCATAA
TCCAACTTATACTATGCTCTAGGTAGAAGTATTGATTGATCAGCATAAAG
CTATTGAGAACTTAGTGTCTCTGATTTCTAGTTGAAATCACCTGTTAACT
CTGCTGACTCTACCCACATGTTTTCTGTGTTCCATTCCATAGGATCCTAG
GCTAAATCTTCCATAGCAGAAAACATATATCCAGTACTACATATTTTATA
ATTTTGAAGATATTTTTATATTCAAATTACCGATTTAATTTATTTTTAAA
TATGTACGTGTTAAGAGAAGGAGGCTTGCAAACAGAGA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACACTTCCAGGCCCTGCAC
AGGCTTCCTCTTCCATGTAGACGTCACTGCTACTGAACAACACTAGCTAT
CAAGGTAACCAGAAGATACTTGTGGGGATCTGTAGTCAGGGGGCCTGTAG
ACAGTCTATAGATGTGTCAGTTGAGGTTGACACATCTTTAAGTCCTCAAG
GAACTAGGAACCATTGTAACTGAGTAAAGAAAAGAACAGGCCATTAACTG
AAGGCTGACTCATGTTCTCTTATGAAGTGGCTGGTGAGATACCAAGGATT
CTAAAGGCAGTTACCAACCCCAACAGTTTGAGTTAGATCTCTGTAGCACA
CATGGTGAAGATCCCAAACCAACTCCCAAAAGTTGTACTCGACCTATACA
TACACACAGGATGAGGAGAGACAGAGAAAATTTTTTAGTGTGCAGAAGTA
TCTATGAACTTTAAACTAAAGTTGGATTTCCAGATTGTTGTCATTGAATA
TTTGCCAAGTAAGGAAGATGTAAATATCTGGATGTAAAAATGCTATATGG
GCCTGCTTTTGTATTCATATACTTCTTTTGCGGTCTTATACTTATTATGC
AGGAGCAGGTTCAGGCCTGGGTTTAGGGCTGTAGTTTAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_f15.b1 MSMg01no145_f15.b1 CHROMAT_FILE:
MSMg01no145_f15.b1 PHD_FILE: MSMg01no145_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:24 2005
         (562 letters)



>mm_chr5_89675916_89676877
          Length = 962

 Score = 1025 bits (530), Expect = 0.0
 Identities = 554/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattacatgttctatgaaataatgttaaaaattgaagagtaaaaggatatataatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattacatgttctatgaaataatgttaaaaattgaagagtaaaaggatatataatatg 260

                                                                       
Query: 61  tgtgtgtattaaaatataagcctcagtggtcacaagaagacacggtctaaaatatgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtgtattaaaatataagcctcagtggtcacaagaagacacggtctaaaatatgtaca 320

                                                                       
Query: 121 cacaggattgtataattttagatcattaagaacaaagtttttataacactaaaaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaggattgtataattttagatcattaagaacaaagtttttataacactaaaaaaacaa 380

                                                                       
Query: 181 aattaaattaatttttaaaaattttgttttaattgtactttaaaaaataagatataggaa 240
           |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 381 aattaaattaattttttaaaattttgttttaattgtactttgaaaagtaagatataggaa 440

                                                                       
Query: 241 gaattcttaaataaatattttaaacacagtgagagtaatacagctaattattttgcagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattcttaaataaatattttaaacacagtgagagtaatacagctaattattttgcagta 500

                                                                       
Query: 301 tcttttctttttctaaaaatcttaaacttcccataatccaacttatactatgctctaggt 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tgttttctttttctaaaaatcttaaacttcccataatccaacttatactattctctaggt 560

                                                                       
Query: 361 agaagtattgattgatcagcataaagctattgagaacttagtgtctctgatttctagttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtattgattgatcagcataaagctattgagaacttagtgtctctgatttctagttg 620

                                                                       
Query: 421 aaatcacctgttaactctgctgactctacccacatgttttctgtgttccattccatagga 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 aaatcacctgttaactctgctgactctatccacatgttttctgtgttccattccatagga 680

                                                                       
Query: 481 tcctaggctaaatcttccatagcagaaaacatatatccagtactacatattttataattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tcctaggctaaatcttccatagcagaaaacatatatccagtactacatattttatgattt 740

                                 
Query: 541 tgaagatatttttatattcaaa 562
           | ||||||||||||||||||||
Sbjct: 741 taaagatatttttatattcaaa 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no145_f15.g1 MSMg01no145_f15.g1 CHROMAT_FILE:
MSMg01no145_f15.g1 PHD_FILE: MSMg01no145_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:25 2005
         (568 letters)



>mm_chr5_89832050_89833017
          Length = 968

 Score =  789 bits (408), Expect = 0.0
 Identities = 441/452 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcacacttccaggccctgcacaggcttcctcttccatgtagacgtcactgctactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggcacacttccaggccctgcacaggcttcctcttccatgtagacgtcactgctactga 393

                                                                       
Query: 61  acaacactagctatcaaggtaaccagaagatacttgtggggatctgtagtcagggggcct 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 392 acaacactagctatcaaggtaaccagaaggtacttgtggggatctgtagtcagggggcct 333

                                                                       
Query: 121 gtagacagtctatagatgtgtcagttgaggttgacacatctttaagtcctcaaggaacta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtagacagtctatagatatgtcagttgaggttgacacatctttaagtcctcaaggaacta 273

                                                                       
Query: 181 ggaaccattgtaactgagtaaagaaaagaacaggccattaactgaaggctgactcatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggaaccattgtaactgagtaaagaaaagaacaggccattaactgaaggctgactcatgtt 213

                                                                       
Query: 241 ctcttatgaagtggctggtgagataccaaggattctaaaggcagttaccaaccccaacag 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctcttatgaagtggctggtgagacaccaaggattctaaaggcagttaccaaccccaacag 153

                                                                       
Query: 301 tttgagttagatctctgtagcacacatggtgaagatcccaaaccaactcccaaaagttgt 360
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tctgagttagatttctgtagcacacatggtgaagatcccaaaccaactcccaaaagttgt 93

                                                                       
Query: 361 actcgacctatacatacacacaggatgaggagagacagagaaaattttttagtgtgcaga 420
           ||| |||||||||||| ||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 92  acttgacctatacatatacaaagaatgaggagagacagagaaaaatttttagtgtgcaga 33

                                           
Query: 421 agtatctatgaactttaaactaaagttggatt 452
           |||||||||||| |||||||||||||||||||
Sbjct: 32  agtatctatgaattttaaactaaagttggatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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